FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0506, 329 aa
  1>>>pF1KE0506 329 - 329 aa - 329 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9384+/-0.000796; mu= 12.7944+/- 0.048
 mean_var=70.0971+/-14.221, 0's: 0 Z-trim(108.3): 7  B-trim: 96 in 1/49
 Lambda= 0.153188
 statistics sampled from 10139 (10144) to 10139 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.312), width:  16
 Scan time:  2.770

The best scores are:                                      opt bits E(32554)
CCDS43001.1 GATSL3 gene_id:652968|Hs108|chr22      ( 329) 2150 484.0 7.2e-137
CCDS75620.1 GATSL2 gene_id:729438|Hs108|chr7       ( 329) 1346 306.3 2.2e-83
CCDS43621.1 GATS gene_id:352954|Hs108|chr7         ( 163)  491 117.2   9e-27


>>CCDS43001.1 GATSL3 gene_id:652968|Hs108|chr22           (329 aa)
 initn: 2150 init1: 2150 opt: 2150  Z-score: 2570.7  bits: 484.0 E(32554): 7.2e-137
Smith-Waterman score: 2150; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)

               10        20        30        40        50        60
pF1KE0 MELHILEHRVRVLSVARPGLWLYTHPLIKLLFLPRRSRCKFFSLTETPEDYTLMVDEEGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MELHILEHRVRVLSVARPGLWLYTHPLIKLLFLPRRSRCKFFSLTETPEDYTLMVDEEGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KELPPSEFLQVAEATWLVLNVSSHSGAAVQAAGVTKIARSVIAPLAEHHVSVLMLSTYQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KELPPSEFLQVAEATWLVLNVSSHSGAAVQAAGVTKIARSVIAPLAEHHVSVLMLSTYQT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DFILVREQDLSVVIHTLAQEFDIYREVGGEPVPVTRDDSSNGFPRTQHGPSPTVHPIQSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DFILVREQDLSVVIHTLAQEFDIYREVGGEPVPVTRDDSSNGFPRTQHGPSPTVHPIQSP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QNRFCVLTLDPETLPAIATTLIDVLFYSHSTPKEAASSSPEPSSITFFAFSLIEGYISIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QNRFCVLTLDPETLPAIATTLIDVLFYSHSTPKEAASSSPEPSSITFFAFSLIEGYISIV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 MDAETQKKFPSDLLLTSSSGELWRMVRIGGQPLGFDECGIVAQIAGPLAAADISAYYIST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MDAETQKKFPSDLLLTSSSGELWRMVRIGGQPLGFDECGIVAQIAGPLAAADISAYYIST
              250       260       270       280       290       300

              310       320         
pF1KE0 FNFDHALVPEDGIGSVIEVLQRRQEGLAS
       :::::::::::::::::::::::::::::
CCDS43 FNFDHALVPEDGIGSVIEVLQRRQEGLAS
              310       320         

>>CCDS75620.1 GATSL2 gene_id:729438|Hs108|chr7            (329 aa)
 initn: 973 init1: 509 opt: 1346  Z-score: 1610.4  bits: 306.3 E(32554): 2.2e-83
Smith-Waterman score: 1346; 63.8% identity (84.7% similar) in 326 aa overlap (1-324:1-325)

               10        20        30        40        50        60
pF1KE0 MELHILEHRVRVLSVARPGLWLYTHPLIKLLFLPRRSRCKFFSLTETPEDYTLMVDEEGF
       :::::::::..: :::. .. :.:. :::: ::  ..:::::::::::::::..::::::
CCDS75 MELHILEHRLQVASVAKESIPLFTYGLIKLAFLSSKTRCKFFSLTETPEDYTIIVDEEGF
               10        20        30        40        50        60

               70        80          90       100       110        
pF1KE0 KELPPSEFLQVAEATWLVLNVSSHSGA--AVQAAGVTKIARSVIAPLAEHHVSVLMLSTY
        ::: :: :.::.::::.::: : .:.  . :  ::::::.:::::::....::.:::::
CCDS75 LELPSSEHLSVADATWLALNVVSGGGSFSSSQPIGVTKIAKSVIAPLADQNISVFMLSTY
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KE0 QTDFILVREQDLSVVIHTLAQEFDIYREVGGEPVPVTRDDSSNGFPRTQHGPSPTVHPIQ
       :::::::::.::  : :::..:: : : :.:: : .     .::: . .    :..::..
CCDS75 QTDFILVRERDLPFVTHTLSSEFTILRVVNGETVAAENLGITNGFVKPKLVQRPVIHPLS
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KE0 SPQNRFCVLTLDPETLPAIATTLIDVLFYSHSTPKEAASSSPEPSSITFFAFSLIEGYIS
       ::.::::: .:::.::::.:: :.::.:::... :.  ... . . : ::.:::::::::
CCDS75 SPSNRFCVTSLDPDTLPAVATLLMDVMFYSNGV-KDPMATGDDCGHIRFFSFSLIEGYIS
              190       200       210        220       230         

      240       250       260       270       280       290        
pF1KE0 IVMDAETQKKFPSDLLLTSSSGELWRMVRIGGQPLGFDECGIVAQIAGPLAAADISAYYI
       .:::..::..:::.::.::.:::::.::::::::::::::::::::. ::::::: ::::
CCDS75 LVMDVQTQQRFPSNLLFTSASGELWKMVRIGGQPLGFDECGIVAQISEPLAAADIPAYYI
     240       250       260       270       280       290         

      300       310       320         
pF1KE0 STFNFDHALVPEDGIGSVIEVLQRRQEGLAS
       :::.::::::::..:..:: .:.  :     
CCDS75 STFKFDHALVPEENINGVISALKVSQAEKH 
     300       310       320          

>>CCDS43621.1 GATS gene_id:352954|Hs108|chr7              (163 aa)
 initn: 478 init1: 283 opt: 491  Z-score: 594.1  bits: 117.2 E(32554): 9e-27
Smith-Waterman score: 491; 67.2% identity (84.9% similar) in 119 aa overlap (27-143:38-156)

                   10        20        30        40        50      
pF1KE0     MELHILEHRVRVLSVARPGLWLYTHPLIKLLFLPRRSRCKFFSLTETPEDYTLMVD
                                     :::: ::  ..:::::::::::::::..::
CCDS43 AGGRWNSTSWSTGCKLPASPRRVSRCSPTGLIKLAFLFSKTRCKFFSLTETPEDYTIIVD
        10        20        30        40        50        60       

         60        70        80          90       100       110    
pF1KE0 EEGFKELPPSEFLQVAEATWLVLNVSSHSGA--AVQAAGVTKIARSVIAPLAEHHVSVLM
       :::: ::: :: :.::.::::.::: : .:.  . :  :.::::.:::::::....::.:
CCDS43 EEGFLELPSSEHLSVADATWLALNVVSGGGSFSSSQPIGMTKIAKSVIAPLADQNISVFM
        70        80        90       100       110       120       

          120       130       140       150       160       170    
pF1KE0 LSTYQTDFILVREQDLSVVIHTLAQEFDIYREVGGEPVPVTRDDSSNGFPRTQHGPSPTV
       ::::::::::: ..::  : :::..:: :                               
CCDS43 LSTYQTDFILVLKRDLPFVTHTLSSEFTILWSVARL                        
       130       140       150       160                           




329 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:46:39 2016 done: Thu Nov  3 03:46:40 2016
 Total Scan time:  2.770 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]