FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0507, 259 aa
  1>>>pF1KE0507 259 - 259 aa - 259 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3379+/-0.000593; mu= 15.5049+/- 0.036
 mean_var=71.9277+/-14.067, 0's: 0 Z-trim(113.1): 29  B-trim: 0 in 0/52
 Lambda= 0.151226
 statistics sampled from 13775 (13796) to 13775 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.424), width:  16
 Scan time:  2.620

The best scores are:                                      opt bits E(32554)
CCDS33655.1 FAM109B gene_id:150368|Hs108|chr22     ( 259) 1799 400.7 5.1e-112
CCDS9152.1 FAM109A gene_id:144717|Hs108|chr12      ( 249)  482 113.4 1.5e-25
CCDS53833.1 FAM109A gene_id:144717|Hs108|chr12     ( 262)  482 113.4 1.6e-25


>>CCDS33655.1 FAM109B gene_id:150368|Hs108|chr22          (259 aa)
 initn: 1799 init1: 1799 opt: 1799  Z-score: 2124.6  bits: 400.7 E(32554): 5.1e-112
Smith-Waterman score: 1799; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE0 MKLNERSVAHYALSDSPADHMGFLRTWGGPGTPPTPSGTGRRCWFVLKGNLLFSFESREG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MKLNERSVAHYALSDSPADHMGFLRTWGGPGTPPTPSGTGRRCWFVLKGNLLFSFESREG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RAPLSLVVLEGCTVELAEAPVPEEFAFAICFDAPGVRPHLLAAEGPAAQEAWVKVLSRAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RAPLSLVVLEGCTVELAEAPVPEEFAFAICFDAPGVRPHLLAAEGPAAQEAWVKVLSRAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FGYMRLVVRELESQLQDARQSLALQRRSSWKSVASRCKPQAPNHRAAGLENGHCLSKDSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FGYMRLVVRELESQLQDARQSLALQRRSSWKSVASRCKPQAPNHRAAGLENGHCLSKDSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PVGLVEEAGSRSAGWGLAEWELQGPASLLLGKGQSPVSPETSCFSTLHDWYGQEIVELRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PVGLVEEAGSRSAGWGLAEWELQGPASLLLGKGQSPVSPETSCFSTLHDWYGQEIVELRQ
              190       200       210       220       230       240

              250         
pF1KE0 CWQKRAQGSHSKCEEQDRP
       :::::::::::::::::::
CCDS33 CWQKRAQGSHSKCEEQDRP
              250         

>>CCDS9152.1 FAM109A gene_id:144717|Hs108|chr12           (249 aa)
 initn: 522 init1: 211 opt: 482  Z-score: 572.0  bits: 113.4 E(32554): 1.5e-25
Smith-Waterman score: 484; 40.2% identity (60.5% similar) in 261 aa overlap (1-247:1-248)

               10        20        30        40        50        60
pF1KE0 MKLNERSVAHYALSDSPADHMGFLRTWGGPGTPPTPSGTGRRCWFVLKGNLLFSFESREG
       :::::::.: ::  :.:.:. :::   ::       ..  :: ::::.::.:: ::.  .
CCDS91 MKLNERSLAFYATCDAPVDNAGFLYKKGG-----RHAAYHRR-WFVLRGNMLFYFEDAAS
               10        20             30         40        50    

               70        80        90       100       110       120
pF1KE0 RAPLSLVVLEGCTVELAEAPVPEEFAFAICFDAPGVRPHLLAAEGPAAQEAWVKVLSRAS
       : :.....::::::::.::   ::::::. : .  .: ..::::.  :.:.:::.:::::
CCDS91 REPVGVIILEGCTVELVEAA--EEFAFAVRFAGTRARTYVLAAESQDAMEGWVKALSRAS
           60        70          80        90       100       110  

              130       140       150       160       170       180
pF1KE0 FGYMRLVVRELESQLQDARQSLALQRRSSWKSVASRCKPQAPNHRAAGLENGHCLSKDSS
       : :.::::::::.::  .: . ..    .  .   .  :  :.  .: :     : .  .
CCDS91 FDYLRLVVRELEQQLAAVRGGGGM----ALPQPQPQSLPLPPSLPSA-LAPVPSLPSAPA
            120       130           140       150        160       

              190           200               210        220       
pF1KE0 PVGLVEEAGSRSA----GWGLAEWELQG--------PASLLLGKGQSPVSP-ETSCFSTL
       ::  .      ::      : : :  ..        :      ....: .: . . :. :
CCDS91 PVPALPLPRRPSALPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGPLDMAPFARL
       170       180       190       200       210       220       

       230       240        250         
pF1KE0 HDWYGQEIVELRQCW-QKRAQGSHSKCEEQDRP
       :. :::::  ::  : ..:.:            
CCDS91 HECYGQEIRALRGQWLSSRVQP           
       230       240                    

>>CCDS53833.1 FAM109A gene_id:144717|Hs108|chr12          (262 aa)
 initn: 522 init1: 211 opt: 482  Z-score: 571.7  bits: 113.4 E(32554): 1.6e-25
Smith-Waterman score: 484; 40.2% identity (60.5% similar) in 261 aa overlap (1-247:14-261)

                            10        20        30        40       
pF1KE0              MKLNERSVAHYALSDSPADHMGFLRTWGGPGTPPTPSGTGRRCWFVL
                    :::::::.: ::  :.:.:. :::   ::       ..  :: ::::
CCDS53 MAPGSPPGPAIATMKLNERSLAFYATCDAPVDNAGFLYKKGG-----RHAAYHRR-WFVL
               10        20        30        40             50     

        50        60        70        80        90       100       
pF1KE0 KGNLLFSFESREGRAPLSLVVLEGCTVELAEAPVPEEFAFAICFDAPGVRPHLLAAEGPA
       .::.:: ::.  .: :.....::::::::.::   ::::::. : .  .: ..::::.  
CCDS53 RGNMLFYFEDAASREPVGVIILEGCTVELVEAA--EEFAFAVRFAGTRARTYVLAAESQD
           60        70        80          90       100       110  

       110       120       130       140       150       160       
pF1KE0 AQEAWVKVLSRASFGYMRLVVRELESQLQDARQSLALQRRSSWKSVASRCKPQAPNHRAA
       :.:.:::.:::::: :.::::::::.::  .: . ..    .  .   .  :  :.  .:
CCDS53 AMEGWVKALSRASFDYLRLVVRELEQQLAAVRGGGGM----ALPQPQPQSLPLPPSLPSA
            120       130       140           150       160        

       170       180       190           200               210     
pF1KE0 GLENGHCLSKDSSPVGLVEEAGSRSA----GWGLAEWELQG--------PASLLLGKGQS
        :     : .  .::  .      ::      : : :  ..        :      ....
CCDS53 -LAPVPSLPSAPAPVPALPLPRRPSALPPKENGCAVWSTEATFRPGPEPPPPPPRRRASA
       170       180       190       200       210       220       

          220       230       240        250         
pF1KE0 PVSP-ETSCFSTLHDWYGQEIVELRQCW-QKRAQGSHSKCEEQDRP
       : .: . . :. ::. :::::  ::  : ..:.:            
CCDS53 PHGPLDMAPFARLHECYGQEIRALRGQWLSSRVQP           
       230       240       250       260             




259 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:43:18 2016 done: Thu Nov  3 03:43:18 2016
 Total Scan time:  2.620 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]