FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0516, 307 aa
  1>>>pF1KE0516 307 - 307 aa - 307 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8835+/-0.00092; mu= 12.0972+/- 0.055
 mean_var=60.0718+/-12.197, 0's: 0 Z-trim(103.7): 13  B-trim: 0 in 0/51
 Lambda= 0.165478
 statistics sampled from 7530 (7534) to 7530 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.599), E-opt: 0.2 (0.231), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS46683.1 HORMAD2 gene_id:150280|Hs108|chr22     ( 307) 2031 493.4 9.1e-140
CCDS967.1 HORMAD1 gene_id:84072|Hs108|chr1         ( 394)  903 224.1 1.3e-58
CCDS55633.1 HORMAD1 gene_id:84072|Hs108|chr1       ( 387)  502 128.4 8.7e-30


>>CCDS46683.1 HORMAD2 gene_id:150280|Hs108|chr22          (307 aa)
 initn: 2031 init1: 2031 opt: 2031  Z-score: 2622.8  bits: 493.4 E(32554): 9.1e-140
Smith-Waterman score: 2031; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)

               10        20        30        40        50        60
pF1KE0 MATAQLSHCITIHKASKETVFPSQITNEHESLKMVKKLFATSISCITYLRGLFPESSYGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MATAQLSHCITIHKASKETVFPSQITNEHESLKMVKKLFATSISCITYLRGLFPESSYGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RHLDDLSLKILREDKKCPGSLHIIRWIQGCFDALEKRYLRMAVLTLYTDPMGSEKVTEMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RHLDDLSLKILREDKKCPGSLHIIRWIQGCFDALEKRYLRMAVLTLYTDPMGSEKVTEMY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QFKFKYTKEGATMDFDSHSSSTSFESGTNNEDIKKASVLLIRKLYILMQDLEPLPNNVVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QFKFKYTKEGATMDFDSHSSSTSFESGTNNEDIKKASVLLIRKLYILMQDLEPLPNNVVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TMKLHYYNAVTPHDYQPLGFKEGVNSHFLLFDKEPINVQVGFVSTGFHSMKVKVMTEATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TMKLHYYNAVTPHDYQPLGFKEGVNSHFLLFDKEPINVQVGFVSTGFHSMKVKVMTEATK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VIDLENNLFRENSTTEIAHQGLDCDEEEECNDHIQRMNFVCSQQSSECSRKKRKVSEPVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VIDLENNLFRENSTTEIAHQGLDCDEEEECNDHIQRMNFVCSQQSSECSRKKRKVSEPVK
              250       260       270       280       290       300

              
pF1KE0 VFIPNRK
       :::::::
CCDS46 VFIPNRK
              

>>CCDS967.1 HORMAD1 gene_id:84072|Hs108|chr1              (394 aa)
 initn: 937 init1: 546 opt: 903  Z-score: 1165.5  bits: 224.1 E(32554): 1.3e-58
Smith-Waterman score: 903; 48.8% identity (76.4% similar) in 301 aa overlap (1-298:1-292)

               10        20        30        40        50        60
pF1KE0 MATAQLSHCITIHKASKETVFPSQITNEHESLKMVKKLFATSISCITYLRGLFPESSYGE
       ::::::..  :  .:    :::..:..::.:: .::.:.:.:.::::::::.::: .:: 
CCDS96 MATAQLQR--TPMSA---LVFPNKISTEHQSLVLVKRLLAVSVSCITYLRGIFPECAYGT
                 10           20        30        40        50     

               70        80        90       100       110       120
pF1KE0 RHLDDLSLKILREDKKCPGSLHIIRWIQGCFDALEKRYLRMAVLTLYTDPMGSEKVTEMY
       :.:::: .:::::::.:::: ....:. ::.:::.:.::::.::..::.:   . ..: :
CCDS96 RYLDDLCVKILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTNPEDPQTISECY
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KE0 QFKFKYTKEGATMDFDSHSSSTSFESGTNNEDIKKASVLLIRKLYILMQDLEPLPNNVVL
       :::::::..:  ::: :...:.  ::.  . : ::::.:::::.:::::.: ::::.: :
CCDS96 QFKFKYTNNGPLMDFISKNQSN--ESSMLSTDTKKASILLIRKIYILMQNLGPLPNDVCL
         120       130         140       150       160       170   

              190       200       210       220       230       240
pF1KE0 TMKLHYYNAVTPHDYQPLGFKEGVNSHFLLFDKEPINVQVGFVSTGFHSMKVKVMTEATK
       :::: ::. ::: :::: :::.: . . ..:. ::. ..:: ::: :: .:::: ::  .
CCDS96 TMKLFYYDEVTPPDYQPPGFKDG-DCEGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERER
           180       190        200       210       220       230  

              250       260        270         280       290       
pF1KE0 VIDLENNLFRENSTTEIAHQGL-DCDEEEECNDHIQR--MNFVCSQQSSECSRKKRKVSE
       . .......  ..     .. : : : :.: ..:     ...  ... .: .  . .. :
CCDS96 MENIDSTILSPKQIKTPFQKILRDKDVEDE-QEHYTSDDLDIETKMEEQEKNPASSELEE
            240       250       260        270       280       290 

       300                                                         
pF1KE0 PVKVFIPNRK                                                  
       :                                                           
CCDS96 PSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPV
             300       310       320       330       340       350 

>>CCDS55633.1 HORMAD1 gene_id:84072|Hs108|chr1            (387 aa)
 initn: 894 init1: 393 opt: 502  Z-score: 648.3  bits: 128.4 E(32554): 8.7e-30
Smith-Waterman score: 850; 47.2% identity (74.1% similar) in 301 aa overlap (1-298:1-285)

               10        20        30        40        50        60
pF1KE0 MATAQLSHCITIHKASKETVFPSQITNEHESLKMVKKLFATSISCITYLRGLFPESSYGE
       ::::::..  :  .:    :::..:..::.:: .::.:.:.:.::::::::.::: .:: 
CCDS55 MATAQLQR--TPMSA---LVFPNKISTEHQSLVLVKRLLAVSVSCITYLRGIFPECAYGT
                 10           20        30        40        50     

               70        80        90       100       110       120
pF1KE0 RHLDDLSLKILREDKKCPGSLHIIRWIQGCFDALEKRYLRMAVLTLYTDPMGSEKVTEMY
       :.:::: .:::::::.:::: ....:. ::.:::.:.:.       ::.:   . ..: :
CCDS55 RYLDDLCVKILREDKNCPGSTQLVKWMLGCYDALQKKYV-------YTNPEDPQTISECY
          60        70        80        90              100        

              130       140       150       160       170       180
pF1KE0 QFKFKYTKEGATMDFDSHSSSTSFESGTNNEDIKKASVLLIRKLYILMQDLEPLPNNVVL
       :::::::..:  ::: :...:.  ::.  . : ::::.:::::.:::::.: ::::.: :
CCDS55 QFKFKYTNNGPLMDFISKNQSN--ESSMLSTDTKKASILLIRKIYILMQNLGPLPNDVCL
      110       120       130         140       150       160      

              190       200       210       220       230       240
pF1KE0 TMKLHYYNAVTPHDYQPLGFKEGVNSHFLLFDKEPINVQVGFVSTGFHSMKVKVMTEATK
       :::: ::. ::: :::: :::.: . . ..:. ::. ..:: ::: :: .:::: ::  .
CCDS55 TMKLFYYDEVTPPDYQPPGFKDG-DCEGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERER
        170       180        190       200       210       220     

              250       260        270         280       290       
pF1KE0 VIDLENNLFRENSTTEIAHQGL-DCDEEEECNDHIQR--MNFVCSQQSSECSRKKRKVSE
       . .......  ..     .. : : : :.: ..:     ...  ... .: .  . .. :
CCDS55 MENIDSTILSPKQIKTPFQKILRDKDVEDE-QEHYTSDDLDIETKMEEQEKNPASSELEE
         230       240       250        260       270       280    

       300                                                         
pF1KE0 PVKVFIPNRK                                                  
       :                                                           
CCDS55 PSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPV
          290       300       310       320       330       340    




307 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:34:22 2016 done: Thu Nov  3 02:34:22 2016
 Total Scan time:  2.070 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]