FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0519, 192 aa
  1>>>pF1KE0519 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8231+/-0.000624; mu= 14.9219+/- 0.038
 mean_var=159.5092+/-32.916, 0's: 0 Z-trim(118.0): 61  B-trim: 4 in 1/52
 Lambda= 0.101550
 statistics sampled from 18768 (18838) to 18768 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.866), E-opt: 0.2 (0.579), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS13890.1 RNF185 gene_id:91445|Hs108|chr22       ( 192) 1379 212.2 1.6e-55
CCDS4745.1 RNF5 gene_id:6048|Hs108|chr6            ( 180)  788 125.5 1.8e-29
CCDS46689.1 RNF185 gene_id:91445|Hs108|chr22       ( 136)  501 83.3 7.1e-17


>>CCDS13890.1 RNF185 gene_id:91445|Hs108|chr22            (192 aa)
 initn: 1379 init1: 1379 opt: 1379  Z-score: 1110.1  bits: 212.2 E(32554): 1.6e-55
Smith-Waterman score: 1379; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KE0 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF
              130       140       150       160       170       180

              190  
pF1KE0 VALVIMFWLLIA
       ::::::::::::
CCDS13 VALVIMFWLLIA
              190  

>>CCDS4745.1 RNF5 gene_id:6048|Hs108|chr6                 (180 aa)
 initn: 729 init1: 616 opt: 788  Z-score: 642.4  bits: 125.5 E(32554): 1.8e-29
Smith-Waterman score: 788; 60.9% identity (77.7% similar) in 184 aa overlap (8-190:2-178)

               10        20        30        40        50        60
pF1KE0 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW
              :.:  :.   ::: : .    : ::  .::::::::.::..::.:.::::.::
CCDS47       MAAAEEED---GGPEGPNR---ERGGAGATFECNICLETAREAVVSVCGHLYCW
                        10           20        30        40        

               70        80        90       100       110       120
pF1KE0 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR
       :::::::::::.:: ::::::::::.::.:::::::   :::: ::::::::::: ::.:
CCDS47 PCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESR
       50        60        70        80        90       100        

              130       140       150        160       170         
pF1KE0 GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDG-RPPPAVPGTPQYVDEQFLSRLFL
       :::: ::   :::..:::.::::::.:.:.:: ..  :   .:     .   .. . :::
CCDS47 GGFQPFG-DTGGFHFSFGVGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFL
      110        120       130       140       150       160       

     180       190  
pF1KE0 FVALVIMFWLLIA
       :.:. ..::::  
CCDS47 FLAIFFFFWLLSI
       170       180

>>CCDS46689.1 RNF185 gene_id:91445|Hs108|chr22            (136 aa)
 initn: 950 init1: 500 opt: 501  Z-score: 416.5  bits: 83.3 E(32554): 7.1e-17
Smith-Waterman score: 842; 70.8% identity (70.8% similar) in 192 aa overlap (1-192:1-136)

               10        20        30        40        50        60
pF1KE0 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR
       :::::                                                       
CCDS46 PCLHQ-------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KE0 GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 -GFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF
           70        80        90       100       110       120    

              190  
pF1KE0 VALVIMFWLLIA
       ::::::::::::
CCDS46 VALVIMFWLLIA
          130      




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:11:50 2016 done: Thu Nov  3 02:11:51 2016
 Total Scan time:  2.220 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]