FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0523, 228 aa
  1>>>pF1KE0523 228 - 228 aa - 228 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5670+/-0.000679; mu= 8.4653+/- 0.041
 mean_var=96.5349+/-18.719, 0's: 0 Z-trim(112.5): 14  B-trim: 0 in 0/52
 Lambda= 0.130537
 statistics sampled from 13210 (13219) to 13210 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.406), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS42985.1 DRICH1 gene_id:51233|Hs108|chr22       ( 229) 1576 306.3 1.1e-83


>>CCDS42985.1 DRICH1 gene_id:51233|Hs108|chr22            (229 aa)
 initn: 908 init1: 908 opt: 1576  Z-score: 1616.1  bits: 306.3 E(32554): 1.1e-83
Smith-Waterman score: 1576; 99.6% identity (99.6% similar) in 229 aa overlap (1-228:1-229)

               10        20        30        40        50        60
pF1KE0 MGNILTCCINSHCGWPRGKDAPCYESDTDIYETVAAATSESTTVEPGKLDVGATEGQDLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MGNILTCCINSHCGWPRGKDAPCYESDTDIYETVAAATSESTTVEPGKLDVGATEGQDLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HISNQKMPTGPPEDRLSLKFLPSSEEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HISNQKMPTGPPEDRLSLKFLPSSEEDNDDAKILPSPVQGSSEDNLSLVCLPRSEDDDCD
               70        80        90       100       110       120

               130       140       150       160       170         
pF1KE0 DDDDD-AQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDDAQILPSPVQ
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DDDDDDAQILPSRVQGGCYRFDSSSCSSEDNLSLVCLPRSEDDDCDDDDDDAQILPSPVQ
              130       140       150       160       170       180

     180       190       200       210       220        
pF1KE0 ACSEDSLFLRCSLRHKDEEEEDDDDIHITARIESDLTLESLSDEEIHPG
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ACSEDSLFLRCSLRHKDEEEEDDDDIHITARIESDLTLESLSDEEIHPG
              190       200       210       220         




228 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:03:18 2016 done: Sat Nov  5 12:03:18 2016
 Total Scan time:  2.430 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]