FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0528, 288 aa
  1>>>pF1KE0528 288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6554+/-0.000766; mu= 14.6395+/- 0.046
 mean_var=76.3895+/-15.109, 0's: 0 Z-trim(109.1): 7  B-trim: 0 in 0/51
 Lambda= 0.146743
 statistics sampled from 10654 (10658) to 10654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.327), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS13914.1 HMOX1 gene_id:3162|Hs108|chr22         ( 288) 1882 407.3 6.5e-114
CCDS66931.1 HMOX2 gene_id:3163|Hs108|chr16         ( 287)  837 186.1 2.6e-47
CCDS10517.1 HMOX2 gene_id:3163|Hs108|chr16         ( 316)  837 186.1 2.8e-47
CCDS73818.1 HMOX2 gene_id:3163|Hs108|chr16         ( 370)  837 186.2 3.2e-47


>>CCDS13914.1 HMOX1 gene_id:3162|Hs108|chr22              (288 aa)
 initn: 1882 init1: 1882 opt: 1882  Z-score: 2158.6  bits: 407.3 E(32554): 6.5e-114
Smith-Waterman score: 1882; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KE0 MERPQPDSMPQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MERPQPDSMPQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKDQSPSRAPGLRQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKDQSPSRAPGLRQRA
              190       200       210       220       230       240

              250       260       270       280        
pF1KE0 SNKVQDSAPVETPRGKPPLNTRSQAPLLRWVLTLSFLVATVAVGLYAM
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SNKVQDSAPVETPRGKPPLNTRSQAPLLRWVLTLSFLVATVAVGLYAM
              250       260       270       280        

>>CCDS66931.1 HMOX2 gene_id:3163|Hs108|chr16              (287 aa)
 initn: 859 init1: 837 opt: 837  Z-score: 963.0  bits: 186.1 E(32554): 2.6e-47
Smith-Waterman score: 837; 56.2% identity (83.2% similar) in 208 aa overlap (12-219:3-210)

               10        20        30        40        50        60
pF1KE0 MERPQPDSMPQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVA
                  :::: :::.:::.: .:::..:...: ::.. .. :::. ..::  : :
CCDS66          MADLSELLKEGTKEAHDRAENTQFVKDFLKGNIKKELFKLATTALYFTYSA
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KE0 LEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHE
       ::::.::::. :.:::.::: ::::: :: .:. ...:  :.: .    : :.::.:.: 
CCDS66 LEEEMERNKDHPAFAPLYFPMELHRKEALTKDMEYFFGENWEEQVQCPKAAQKYVERIHY
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KE0 VGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQ
       .:..:::::::::::::.:::::::::::.::.:: :::.:::  :. : :. .: .:::
CCDS66 IGQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQ
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KE0 LYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKDQSPSRAPGLRQRA
       :::.:::.:...  ...:..:::. ::  :.:.:.::..                     
CCDS66 LYRARMNALDLNMKTKERIVEEANKAFEYNMQIFNELDQAGSTLARETLEDGFPVHDGKG
             180       190       200       210       220       230 

              250       260       270       280                
pF1KE0 SNKVQDSAPVETPRGKPPLNTRSQAPLLRWVLTLSFLVATVAVGLYAM        
                                                               
CCDS66 DMRKCPFYAAEQDKGALEGSSCPFRTAMAVLRKPSLQFILAAGVALAAGLLAWYYM
             240       250       260       270       280       

>>CCDS10517.1 HMOX2 gene_id:3163|Hs108|chr16              (316 aa)
 initn: 859 init1: 837 opt: 837  Z-score: 962.4  bits: 186.1 E(32554): 2.8e-47
Smith-Waterman score: 837; 56.2% identity (83.2% similar) in 208 aa overlap (12-219:32-239)

                                  10        20        30        40 
pF1KE0                    MERPQPDSMPQDLSEALKEATKEVHTQAENAEFMRNFQKGQ
                                     :::: :::.:::.: .:::..:...: ::.
CCDS10 SAEVETSEGVDESEKKNSGALEKENQMRMADLSELLKEGTKEAHDRAENTQFVKDFLKGN
              10        20        30        40        50        60 

              50        60        70        80        90       100 
pF1KE0 VTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRW
       . .. :::. ..::  : :::::.::::. :.:::.::: ::::: :: .:. ...:  :
CCDS10 IKKELFKLATTALYFTYSALEEEMERNKDHPAFAPLYFPMELHRKEALTKDMEYFFGENW
              70        80        90       100       110       120 

             110       120       130       140       150       160 
pF1KE0 QEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSG
       .: .    : :.::.:.: .:..:::::::::::::.:::::::::::.::.:: :::.:
CCDS10 EEQVQCPKAAQKYVERIHYIGQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPSTG
             130       140       150       160       170       180 

             170       180       190       200       210       220 
pF1KE0 EGLAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELL
       ::  :. : :. .: .::::::.:::.:...  ...:..:::. ::  :.:.:.::..  
CCDS10 EGTQFYLFENVDNAQQFKQLYRARMNALDLNMKTKERIVEEANKAFEYNMQIFNELDQAG
             190       200       210       220       230       240 

             230       240       250       260       270       280 
pF1KE0 THDTKDQSPSRAPGLRQRASNKVQDSAPVETPRGKPPLNTRSQAPLLRWVLTLSFLVATV
                                                                   
CCDS10 STLARETLEDGFPVHDGKGDMRKCPFYAAEQDKGALEGSSCPFRTAMAVLRKPSLQFILA
             250       260       270       280       290       300 

>>CCDS73818.1 HMOX2 gene_id:3163|Hs108|chr16              (370 aa)
 initn: 859 init1: 837 opt: 837  Z-score: 961.3  bits: 186.2 E(32554): 3.2e-47
Smith-Waterman score: 837; 56.2% identity (83.2% similar) in 208 aa overlap (12-219:86-293)

                                  10        20        30        40 
pF1KE0                    MERPQPDSMPQDLSEALKEATKEVHTQAENAEFMRNFQKGQ
                                     :::: :::.:::.: .:::..:...: ::.
CCDS73 SAEVETSEGVDESEKKNSGALEKENQMRMADLSELLKEGTKEAHDRAENTQFVKDFLKGN
          60        70        80        90       100       110     

              50        60        70        80        90       100 
pF1KE0 VTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRW
       . .. :::. ..::  : :::::.::::. :.:::.::: ::::: :: .:. ...:  :
CCDS73 IKKELFKLATTALYFTYSALEEEMERNKDHPAFAPLYFPMELHRKEALTKDMEYFFGENW
         120       130       140       150       160       170     

             110       120       130       140       150       160 
pF1KE0 QEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSG
       .: .    : :.::.:.: .:..:::::::::::::.:::::::::::.::.:: :::.:
CCDS73 EEQVQCPKAAQKYVERIHYIGQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPSTG
         180       190       200       210       220       230     

             170       180       190       200       210       220 
pF1KE0 EGLAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELL
       ::  :. : :. .: .::::::.:::.:...  ...:..:::. ::  :.:.:.::..  
CCDS73 EGTQFYLFENVDNAQQFKQLYRARMNALDLNMKTKERIVEEANKAFEYNMQIFNELDQAG
         240       250       260       270       280       290     

             230       240       250       260       270       280 
pF1KE0 THDTKDQSPSRAPGLRQRASNKVQDSAPVETPRGKPPLNTRSQAPLLRWVLTLSFLVATV
                                                                   
CCDS73 STLARETLEDGFPVHDGKGDMRKCPFYAAEQDKGALEGSSCPFRTAMAVLRKPSLQFILA
         300       310       320       330       340       350     




288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:37:29 2016 done: Thu Nov  3 01:37:29 2016
 Total Scan time:  2.650 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]