FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0533, 206 aa
  1>>>pF1KE0533 206 - 206 aa - 206 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0650+/-0.000755; mu= 7.3953+/- 0.046
 mean_var=136.3569+/-27.366, 0's: 0 Z-trim(113.3): 8  B-trim: 191 in 2/52
 Lambda= 0.109834
 statistics sampled from 13977 (13984) to 13977 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.43), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS13760.1 MRPL40 gene_id:64976|Hs108|chr22       ( 206) 1349 224.0   5e-59


>>CCDS13760.1 MRPL40 gene_id:64976|Hs108|chr22            (206 aa)
 initn: 1349 init1: 1349 opt: 1349  Z-score: 1173.3  bits: 224.0 E(32554): 5e-59
Smith-Waterman score: 1349; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)

               10        20        30        40        50        60
pF1KE0 MTASVLRSISLALRPTSGLLGTWQTQLRETHQRASLLSFWELIPMRSEPLRKKKKVDPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTASVLRSISLALRPTSGLLGTWQTQLRETHQRASLLSFWELIPMRSEPLRKKKKVDPKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DQEAKERLKRKIRKLEKATQELIPIEDFITPLKFLDKARERPQVELTFEETERRALLLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DQEAKERLKRKIRKLEKATQELIPIEDFITPLKFLDKARERPQVELTFEETERRALLLKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 WSLYKQQERKMERDTIRAMLEAQQEALEELQLESPKLHAEAIKRDPNLFPFEKEGPHYTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WSLYKQQERKMERDTIRAMLEAQQEALEELQLESPKLHAEAIKRDPNLFPFEKEGPHYTP
              130       140       150       160       170       180

              190       200      
pF1KE0 PIPNYQPPEGRYNDITKVYTQVEFKR
       ::::::::::::::::::::::::::
CCDS13 PIPNYQPPEGRYNDITKVYTQVEFKR
              190       200      




206 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:01:54 2016 done: Thu Nov  3 01:01:54 2016
 Total Scan time:  2.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]