FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0533, 206 aa
  1>>>pF1KE0533 206 - 206 aa - 206 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7153+/-0.000294; mu= 9.6316+/- 0.018
 mean_var=140.4479+/-28.581, 0's: 0 Z-trim(121.1): 5  B-trim: 867 in 1/58
 Lambda= 0.108222
 statistics sampled from 37222 (37229) to 37222 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.437), width:  16
 Scan time:  5.020

The best scores are:                                      opt bits E(85289)
NP_003767 (OMIM: 605089) 39S ribosomal protein L40 ( 206) 1349 220.9 1.1e-57
NP_001305080 (OMIM: 605089) 39S ribosomal protein  ( 162) 1067 176.8 1.7e-44
NP_001305081 (OMIM: 605089) 39S ribosomal protein  ( 162) 1067 176.8 1.7e-44


>>NP_003767 (OMIM: 605089) 39S ribosomal protein L40, mi  (206 aa)
 initn: 1349 init1: 1349 opt: 1349  Z-score: 1156.4  bits: 220.9 E(85289): 1.1e-57
Smith-Waterman score: 1349; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)

               10        20        30        40        50        60
pF1KE0 MTASVLRSISLALRPTSGLLGTWQTQLRETHQRASLLSFWELIPMRSEPLRKKKKVDPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MTASVLRSISLALRPTSGLLGTWQTQLRETHQRASLLSFWELIPMRSEPLRKKKKVDPKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DQEAKERLKRKIRKLEKATQELIPIEDFITPLKFLDKARERPQVELTFEETERRALLLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DQEAKERLKRKIRKLEKATQELIPIEDFITPLKFLDKARERPQVELTFEETERRALLLKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 WSLYKQQERKMERDTIRAMLEAQQEALEELQLESPKLHAEAIKRDPNLFPFEKEGPHYTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 WSLYKQQERKMERDTIRAMLEAQQEALEELQLESPKLHAEAIKRDPNLFPFEKEGPHYTP
              130       140       150       160       170       180

              190       200      
pF1KE0 PIPNYQPPEGRYNDITKVYTQVEFKR
       ::::::::::::::::::::::::::
NP_003 PIPNYQPPEGRYNDITKVYTQVEFKR
              190       200      

>>NP_001305080 (OMIM: 605089) 39S ribosomal protein L40,  (162 aa)
 initn: 1067 init1: 1067 opt: 1067  Z-score: 919.8  bits: 176.8 E(85289): 1.7e-44
Smith-Waterman score: 1067; 100.0% identity (100.0% similar) in 162 aa overlap (45-206:1-162)

           20        30        40        50        60        70    
pF1KE0 PTSGLLGTWQTQLRETHQRASLLSFWELIPMRSEPLRKKKKVDPKKDQEAKERLKRKIRK
                                     ::::::::::::::::::::::::::::::
NP_001                               MRSEPLRKKKKVDPKKDQEAKERLKRKIRK
                                             10        20        30

           80        90       100       110       120       130    
pF1KE0 LEKATQELIPIEDFITPLKFLDKARERPQVELTFEETERRALLLKKWSLYKQQERKMERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEKATQELIPIEDFITPLKFLDKARERPQVELTFEETERRALLLKKWSLYKQQERKMERD
               40        50        60        70        80        90

          140       150       160       170       180       190    
pF1KE0 TIRAMLEAQQEALEELQLESPKLHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIRAMLEAQQEALEELQLESPKLHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYND
              100       110       120       130       140       150

          200      
pF1KE0 ITKVYTQVEFKR
       ::::::::::::
NP_001 ITKVYTQVEFKR
              160  

>>NP_001305081 (OMIM: 605089) 39S ribosomal protein L40,  (162 aa)
 initn: 1067 init1: 1067 opt: 1067  Z-score: 919.8  bits: 176.8 E(85289): 1.7e-44
Smith-Waterman score: 1067; 100.0% identity (100.0% similar) in 162 aa overlap (45-206:1-162)

           20        30        40        50        60        70    
pF1KE0 PTSGLLGTWQTQLRETHQRASLLSFWELIPMRSEPLRKKKKVDPKKDQEAKERLKRKIRK
                                     ::::::::::::::::::::::::::::::
NP_001                               MRSEPLRKKKKVDPKKDQEAKERLKRKIRK
                                             10        20        30

           80        90       100       110       120       130    
pF1KE0 LEKATQELIPIEDFITPLKFLDKARERPQVELTFEETERRALLLKKWSLYKQQERKMERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEKATQELIPIEDFITPLKFLDKARERPQVELTFEETERRALLLKKWSLYKQQERKMERD
               40        50        60        70        80        90

          140       150       160       170       180       190    
pF1KE0 TIRAMLEAQQEALEELQLESPKLHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIRAMLEAQQEALEELQLESPKLHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYND
              100       110       120       130       140       150

          200      
pF1KE0 ITKVYTQVEFKR
       ::::::::::::
NP_001 ITKVYTQVEFKR
              160  




206 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:01:54 2016 done: Thu Nov  3 01:01:55 2016
 Total Scan time:  5.020 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]