FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0539, 403 aa
  1>>>pF1KE0539 403 - 403 aa - 403 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3329+/-0.000973; mu= 17.2125+/- 0.058
 mean_var=68.0204+/-13.568, 0's: 0 Z-trim(104.8): 14  B-trim: 0 in 0/49
 Lambda= 0.155509
 statistics sampled from 8082 (8092) to 8082 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.249), width:  16
 Scan time:  2.530

The best scores are:                                      opt bits E(32554)
CCDS13988.1 RPL3 gene_id:6122|Hs108|chr22          ( 403) 2700 614.9 4.3e-176
CCDS10450.1 RPL3L gene_id:6123|Hs108|chr16         ( 407) 2206 504.0  1e-142


>>CCDS13988.1 RPL3 gene_id:6122|Hs108|chr22               (403 aa)
 initn: 2700 init1: 2700 opt: 2700  Z-score: 3274.9  bits: 614.9 E(32554): 4.3e-176
Smith-Waterman score: 2700; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)

               10        20        30        40        50        60
pF1KE0 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
              310       320       330       340       350       360

              370       380       390       400   
pF1KE0 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA
       :::::::::::::::::::::::::::::::::::::::::::
CCDS13 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA
              370       380       390       400   

>>CCDS10450.1 RPL3L gene_id:6123|Hs108|chr16              (407 aa)
 initn: 2205 init1: 2205 opt: 2206  Z-score: 2675.9  bits: 504.0 E(32554): 1e-142
Smith-Waterman score: 2206; 78.2% identity (94.5% similar) in 400 aa overlap (1-400:1-399)

               10        20        30        40        50        60
pF1KE0 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
       :::::::::::: :::::.::: :::::::..:.::::.:::::::::::::::: .:::
CCDS10 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
        ::: :..:.: :::::::::::.::::.:::: ::::::.:::.::::.::::.:::::
CCDS10 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
       .::::::::::: ::.:.: ::::::.:::..:::::.:::::.::::.:::.::::::.
CCDS10 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
       ::::.::::::::. ::. :::.::::..::.:.:.::::.::::.: ::::::::::::
CCDS10 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
       :::::.::::::::::::::::. :.:::::::::::::.::::..::.:  ..::::.:
CCDS10 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
       :::::.::.. :::.::::: :::::.:::::::::..::::::.::::::::. .:.:.
CCDS10 NNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAV
              310       320       330       340       350       360

              370       380       390       400        
pF1KE0 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA     
       :.:.::::::::::::::::: .::.::::: :: .. ::        
CCDS10 ENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK-HLEKETPETSGDL
              370       380       390        400       




403 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:30:12 2016 done: Thu Nov  3 00:30:13 2016
 Total Scan time:  2.530 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]