FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0539, 403 aa
  1>>>pF1KE0539 403 - 403 aa - 403 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4118+/-0.000419; mu= 16.8955+/- 0.026
 mean_var=68.7550+/-14.206, 0's: 0 Z-trim(111.4): 8  B-trim: 530 in 1/52
 Lambda= 0.154676
 statistics sampled from 20009 (20016) to 20009 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.235), width:  16
 Scan time:  6.760

The best scores are:                                      opt bits E(85289)
NP_000958 (OMIM: 604163) 60S ribosomal protein L3  ( 403) 2700 611.7 9.9e-175
NP_001029025 (OMIM: 604163) 60S ribosomal protein  ( 354) 1512 346.6 5.6e-95


>>NP_000958 (OMIM: 604163) 60S ribosomal protein L3 isof  (403 aa)
 initn: 2700 init1: 2700 opt: 2700  Z-score: 3258.0  bits: 611.7 E(85289): 9.9e-175
Smith-Waterman score: 2700; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)

               10        20        30        40        50        60
pF1KE0 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
              310       320       330       340       350       360

              370       380       390       400   
pF1KE0 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA
       :::::::::::::::::::::::::::::::::::::::::::
NP_000 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA
              370       380       390       400   

>>NP_001029025 (OMIM: 604163) 60S ribosomal protein L3 i  (354 aa)
 initn: 1512 init1: 1512 opt: 1512  Z-score: 1826.1  bits: 346.6 E(85289): 5.6e-95
Smith-Waterman score: 2255; 87.8% identity (87.8% similar) in 403 aa overlap (1-403:1-354)

               10        20        30        40        50        60
pF1KE0 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
       :::::::::                                                 ::
NP_001 NWHKSKKKA-------------------------------------------------HL
                                                               130 

              190       200       210       220       230       240
pF1KE0 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
             140       150       160       170       180       190 

              250       260       270       280       290       300
pF1KE0 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
             200       210       220       230       240       250 

              310       320       330       340       350       360
pF1KE0 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
             260       270       280       290       300       310 

              370       380       390       400   
pF1KE0 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA
       :::::::::::::::::::::::::::::::::::::::::::
NP_001 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA
             320       330       340       350    




403 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:30:13 2016 done: Thu Nov  3 00:30:14 2016
 Total Scan time:  6.760 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]