FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0540, 266 aa
  1>>>pF1KE0540 266 - 266 aa - 266 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6090+/-0.000602; mu= 14.3655+/- 0.036
 mean_var=76.6464+/-15.391, 0's: 0 Z-trim(113.5): 6  B-trim: 0 in 0/51
 Lambda= 0.146497
 statistics sampled from 14114 (14117) to 14114 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.434), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS14095.1 SCO2 gene_id:9997|Hs108|chr22          ( 266) 1807 390.4 6.9e-109
CCDS11158.1 SCO1 gene_id:6341|Hs108|chr17          ( 301)  712 159.0 3.6e-39


>>CCDS14095.1 SCO2 gene_id:9997|Hs108|chr22               (266 aa)
 initn: 1807 init1: 1807 opt: 1807  Z-score: 2068.3  bits: 390.4 E(32554): 6.9e-109
Smith-Waterman score: 1807; 99.6% identity (99.6% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KE0 MLLLTRSPTAWHRLSQLKPPVLPGTLGGQALHLRSWLLSRQGPAETGGQGQPQGPGLRTR
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS14 MLLLTRSPTAWHRLSQLKPRVLPGTLGGQALHLRSWLLSRQGPAETGGQGQPQGPGLRTR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LLITGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LLITGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY
              190       200       210       220       230       240

              250       260      
pF1KE0 YGRSRSAEQISDSVRRHMAAFRSVLS
       ::::::::::::::::::::::::::
CCDS14 YGRSRSAEQISDSVRRHMAAFRSVLS
              250       260      

>>CCDS11158.1 SCO1 gene_id:6341|Hs108|chr17               (301 aa)
 initn: 667 init1: 617 opt: 712  Z-score: 816.8  bits: 159.0 E(32554): 3.6e-39
Smith-Waterman score: 712; 44.1% identity (72.7% similar) in 227 aa overlap (36-262:76-298)

          10        20        30        40        50        60     
pF1KE0 RSPTAWHRLSQLKPPVLPGTLGGQALHLRSWLLSRQGPAETGGQGQPQGPGLRTRLLITG
                                     :  :..::...   ..: ::     : :: 
CCDS11 ARQAEAWRASGRPGYCLGTRPLSTARPPPPW--SQKGPGDSTRPSKP-GPVSWKSLAITF
          50        60        70          80        90        100  

          70        80        90       100       110       120     
pF1KE0 LFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQWVL
        .:..: ..   .. :: .  ...: . . .  .: : : :  : :. .   :. :::.:
CCDS11 AIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLG-GPFSLTTHTGERKTDKDYLGQWLL
            110       120       130        140       150       160 

         130       140       150       160       170       180     
pF1KE0 MYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFH
       .:::::::::.::.::::..::: ....   :: . :.::..:::::  ::.: ::..: 
CCDS11 IYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFS
             170       180       190       200       210       220 

         190       200       210       220       230       240     
pF1KE0 PRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSR
       :.:.::::. ..: :....:::::. ::::::.::::::.: .::..::: : ::.:...
CCDS11 PKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK
             230       240       250       260       270       280 

         250       260      
pF1KE0 SAEQISDSVRRHMAAFRSVLS
          .:. :.  ::  .:    
CCDS11 RKGEIAASIATHMRPYRKKS 
             290       300  




266 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:27:32 2016 done: Thu Nov  3 00:27:32 2016
 Total Scan time:  1.780 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]