FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0541, 221 aa
  1>>>pF1KE0541 221 - 221 aa - 221 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0844+/-0.000637; mu= 15.6448+/- 0.039
 mean_var=67.8540+/-13.689, 0's: 0 Z-trim(111.2): 18  B-trim: 9 in 1/49
 Lambda= 0.155699
 statistics sampled from 12211 (12223) to 12211 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.375), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS13792.1 SDF2L1 gene_id:23753|Hs108|chr22       ( 221) 1537 353.4 6.6e-98
CCDS11238.1 SDF2 gene_id:6388|Hs108|chr17          ( 211)  922 215.2 2.5e-56


>>CCDS13792.1 SDF2L1 gene_id:23753|Hs108|chr22            (221 aa)
 initn: 1537 init1: 1537 opt: 1537  Z-score: 1871.2  bits: 353.4 E(32554): 6.6e-98
Smith-Waterman score: 1537; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE0 MWSAGRGGAAWPVLLGLLLALLVPGGGAAKTGAELVTCGSVLKLLNTHHRVRLHSHDIKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MWSAGRGGAAWPVLLGLLLALLVPGGGAAKTGAELVTCGSVLKLLNTHHRVRLHSHDIKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PSPLSNNQEVSAFGEDGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PSPLSNNQEVSAFGEDGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGS
              130       140       150       160       170       180

              190       200       210       220 
pF1KE0 PIRGQHEVHGMPSANTHNTWKAMEGIFIKPSVEPSAGHDEL
       :::::::::::::::::::::::::::::::::::::::::
CCDS13 PIRGQHEVHGMPSANTHNTWKAMEGIFIKPSVEPSAGHDEL
              190       200       210       220 

>>CCDS11238.1 SDF2 gene_id:6388|Hs108|chr17               (211 aa)
 initn: 915 init1: 899 opt: 922  Z-score: 1124.9  bits: 215.2 E(32554): 2.5e-56
Smith-Waterman score: 922; 65.7% identity (81.6% similar) in 207 aa overlap (17-221:7-211)

               10        20        30        40        50        60
pF1KE0 MWSAGRGGAAWPVLLGLLLALLVPGGGAAKTGAELVTCGSVLKLLNTHHRVRLHSHDIKY
                       :::. :  . ::.. :  .::::::.:::::.: :::::::..:
CCDS11           MAVVPLLLLGGLWSAVGASSLG--VVTCGSVVKLLNTRHNVRLHSHDVRY
                         10        20          30        40        

               70        80        90       100       110       120
pF1KE0 GSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHF
       :::::::::::: . ::.:::::::: :   : ::.:..::: .::::: ::.:::.:::
CCDS11 GSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHF
       50        60        70        80        90       100        

              130       140       150       160       170       180
pF1KE0 PSPLSNNQEVSAFGEDGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGS
        ::::.:::::::::.:::: :: ::: :.: .: :.. :::.: .: :.::::::::: 
CCDS11 TSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGR
      110       120       130       140       150       160        

              190       200       210         220 
pF1KE0 PIRGQHEVHGMPSANTHNTWKAMEGIFIKPS--VEPSAGHDEL
       :: ::.::::: . . .: ::::::::.:::  ..  : : ::
CCDS11 PISGQKEVHGMAQPSQNNYWKAMEGIFMKPSELLKAEAHHAEL
      170       180       190       200       210 




221 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:25:33 2016 done: Thu Nov  3 00:25:33 2016
 Total Scan time:  2.040 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]