FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0548, 166 aa
  1>>>pF1KE0548 166 - 166 aa - 166 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6022+/-0.000644; mu= 11.4398+/- 0.039
 mean_var=69.5814+/-13.793, 0's: 0 Z-trim(111.5): 37  B-trim: 741 in 1/50
 Lambda= 0.153754
 statistics sampled from 12418 (12454) to 12418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.383), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS13928.1 TXN2 gene_id:25828|Hs108|chr22         ( 166) 1110 254.3 2.5e-68


>>CCDS13928.1 TXN2 gene_id:25828|Hs108|chr22              (166 aa)
 initn: 1110 init1: 1110 opt: 1110  Z-score: 1340.1  bits: 254.3 E(32554): 2.5e-68
Smith-Waterman score: 1110; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KE0 MAQRLLLRRFLASVISRKPSQGQWPPLTSRALQTPQCSPGGLTVTPNPARTIYTTRISLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAQRLLLRRFLASVISRKPSQGQWPPLTSRALQTPQCSPGGLTVTPNPARTIYTTRISLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD
               70        80        90       100       110       120

              130       140       150       160      
pF1KE0 HTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG
              130       140       150       160      




166 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:59:30 2016 done: Wed Nov  2 23:59:30 2016
 Total Scan time:  1.680 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]