Result of FASTA (ccds) for
pF1KE0549
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0549, 154 aa
1>>>pF1KE0549 154 - 154 aa - 154 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1341+/-0.000607; mu= 13.6053+/- 0.037
mean_var=69.0881+/-13.532, 0's: 0 Z-trim(111.7): 63 B-trim: 0 in 0/52
Lambda= 0.154302
statistics sampled from 12535 (12600) to 12535 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.387), width: 16
Scan time: 1.630
The best scores are: opt bits E(32554)
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 1056 243.0 5.4e-65
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 1006 232.0 1.5e-61
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 787 183.1 4.7e-47
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 594 140.2 4.9e-34
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 410 99.2 1e-21
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 404 97.9 2.5e-21
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 399 96.8 5.5e-21
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 393 95.4 1.4e-20
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 391 95.0 1.9e-20
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 387 94.0 2.9e-20
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 387 94.1 3.5e-20
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 381 92.7 7.4e-20
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 368 89.8 5.2e-19
CCDS7961.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 87) 348 85.2 9.5e-18
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 347 85.3 2.1e-17
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 337 83.0 9.7e-17
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 337 83.1 1e-16
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 337 83.1 1e-16
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 333 82.1 1.5e-16
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 332 81.9 1.8e-16
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 330 81.5 2.7e-16
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 308 76.5 7.1e-15
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 303 75.4 1.5e-14
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 296 73.9 5.6e-14
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 293 73.2 8.3e-14
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 279 70.0 5.1e-13
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 273 68.7 1.6e-12
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 264 66.8 7.3e-12
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 256 64.9 2.2e-11
CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9 ( 238) 251 64.0 6.7e-11
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 ( 170) 249 63.4 7e-11
>>CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 (154 aa)
initn: 1056 init1: 1056 opt: 1056 Z-score: 1280.4 bits: 243.0 E(32554): 5.4e-65
Smith-Waterman score: 1056; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE0 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP
70 80 90 100 110 120
130 140 150
pF1KE0 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
::::::::::::::::::::::::::::::::::
CCDS13 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
130 140 150
>>CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 (212 aa)
initn: 1003 init1: 1003 opt: 1006 Z-score: 1218.3 bits: 232.0 E(32554): 1.5e-61
Smith-Waterman score: 1006; 94.9% identity (96.8% similar) in 156 aa overlap (1-154:57-212)
10 20
pF1KE0 MAASRRLM--KELEEIRKCGMKNFRNIQVD
.:. :: .:::::::::::::::::::
CCDS58 VLGQRRARLLRQVPSALAGKDLAQLQAGATLAGYRRAHGPEELEEIRKCGMKNFRNIQVD
30 40 50 60 70 80
30 40 50 60 70 80
pF1KE0 EANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLP
90 100 110 120 130 140
90 100 110 120 130 140
pF1KE0 VISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG
150 160 170 180 190 200
150
pF1KE0 EKRPVD
::::::
CCDS58 EKRPVD
210
>>CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 (122 aa)
initn: 787 init1: 787 opt: 787 Z-score: 958.2 bits: 183.1 E(32554): 4.7e-47
Smith-Waterman score: 787; 97.4% identity (99.1% similar) in 116 aa overlap (39-154:7-122)
10 20 30 40 50 60
pF1KE0 KELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKI
.. :::::::::::::::::::::::::::
CCDS58 MAASRRLMKDNPPYDKGAFRIEINFPAEYPFKPPKI
10 20 30
70 80 90 100 110 120
pF1KE0 TFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEE
40 50 60 70 80 90
130 140 150
pF1KE0 YSKDRKKFCKNAEEFTKKYGEKRPVD
::::::::::::::::::::::::::
CCDS58 YSKDRKKFCKNAEEFTKKYGEKRPVD
100 110 120
>>CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 (153 aa)
initn: 594 init1: 594 opt: 594 Z-score: 724.6 bits: 140.2 E(32554): 4.9e-34
Smith-Waterman score: 594; 55.3% identity (80.3% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KE0 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
: :: :..::::...: .::.. :.::.:.:..:..::.::: :: ..:.:: :
CCDS79 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP
:::::: : : :::::::.::.::.:::.::.::::: ::: ::...: .::: :. ..:
CCDS79 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREP
70 80 90 100 110 120
130 140 150
pF1KE0 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
:: :::. ... . : ::::::: ..: ::
CCDS79 LRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS
130 140 150
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 391 init1: 232 opt: 410 Z-score: 503.5 bits: 99.2 E(32554): 1e-21
Smith-Waterman score: 410; 39.7% identity (74.7% similar) in 146 aa overlap (3-147:2-145)
10 20 30 40 50
pF1KE0 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPA
: .:..::: .... . : . .:. ::. :. :.. ::. :.: . :.::.
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 EYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEH
.:::::::..: ::::::::. .:..:: .. .. :.:: ...:. :. .:. ::.:.
CCDS54 DYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDD
60 70 80 90 100 110
120 130 140 150
pF1KE0 PLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
:: ..:. :. ::.:. . :.:.:.::
CCDS54 PLVPEIAHTYKADREKYNRLAREWTQKYAM
120 130 140
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 358 init1: 184 opt: 404 Z-score: 496.3 bits: 97.9 E(32554): 2.5e-21
Smith-Waterman score: 404; 39.0% identity (74.7% similar) in 146 aa overlap (3-147:2-145)
10 20 30 40 50
pF1KE0 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPA
: .:..::: .... . : . .:. ::. :. : . :. :.: . ..::.
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 EYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEH
.::::::::.: ::::::::. .:..:: .. .. :.:: ...:. :. .:. ::.:.
CCDS72 DYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDD
60 70 80 90 100 110
120 130 140 150
pF1KE0 PLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
:: :.:. :..:..:. ..:.:.:.::
CCDS72 PLVPDIAQIYKSDKEKYNRHAREWTQKYAM
120 130 140
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 385 init1: 229 opt: 399 Z-score: 490.2 bits: 96.8 E(32554): 5.5e-21
Smith-Waterman score: 399; 38.4% identity (73.3% similar) in 146 aa overlap (3-147:2-145)
10 20 30 40 50
pF1KE0 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPA
: .:. :::... . . : . ... ::. :. :.. ::. :.: . :.::.
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 EYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEH
.:::::::..: :.::::::. .:..:: .. .. :.:: ..:. :. .:. ::.:.
CCDS43 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
120 130 140 150
pF1KE0 PLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
:: ..:. :. ::.:. . :.:.:.::
CCDS43 PLVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 381 init1: 229 opt: 393 Z-score: 483.0 bits: 95.4 E(32554): 1.4e-20
Smith-Waterman score: 393; 38.4% identity (71.9% similar) in 146 aa overlap (3-147:2-145)
10 20 30 40 50
pF1KE0 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPA
: .:. ::: .. . . : . ... ::. :. :.. ::. :.: . :.::.
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 EYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEH
.:::::::..: :.::::::. .:..:: .. .. :.:: ..:. :. .:. ::.:.
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
120 130 140 150
pF1KE0 PLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
:: ..:. :. :: :. . :.:.:.::
CCDS36 PLVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 379 init1: 229 opt: 391 Z-score: 480.6 bits: 95.0 E(32554): 1.9e-20
Smith-Waterman score: 391; 37.7% identity (71.9% similar) in 146 aa overlap (3-147:2-145)
10 20 30 40 50
pF1KE0 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPA
: .:. ::: .. . . : . ... ::. :. :.. ::. :.: . :.::.
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 EYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEH
.:::::::..: :.::::::. .:..:: .. .. :.:: ..:. :. .:. ::.:.
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
120 130 140 150
pF1KE0 PLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
:: ..:. :. :: :. . ..:.:.::
CCDS36 PLVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 (118 aa)
initn: 372 init1: 216 opt: 387 Z-score: 477.2 bits: 94.0 E(32554): 2.9e-20
Smith-Waterman score: 387; 42.7% identity (78.6% similar) in 117 aa overlap (32-147:1-116)
10 20 30 40 50 60
pF1KE0 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAE
.. ::. :. :.. ::. :.: . :.::..
CCDS47 MFHWQATIMGPNDSPYQGGVFFLTIHFPTD
10 20 30
70 80 90 100 110 120
pF1KE0 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP
:::::::..: :.::::::. .:..:: .. .. :.:: ..:. :. .:. ::.:. :
CCDS47 YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDP
40 50 60 70 80
130 140 150
pF1KE0 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
: ..:. :. ::.:. . :.:.:.::
CCDS47 LVPEIARIYKTDREKYNRIAREWTQKYAM
90 100 110
154 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:56:08 2016 done: Wed Nov 2 23:56:08 2016
Total Scan time: 1.630 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]