FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0550, 307 aa
  1>>>pF1KE0550 307 - 307 aa - 307 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9280+/-0.000815; mu= 12.4626+/- 0.049
 mean_var=70.9077+/-14.127, 0's: 0 Z-trim(107.4): 16  B-trim: 0 in 0/51
 Lambda= 0.152310
 statistics sampled from 9529 (9538) to 9529 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.293), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS13761.1 UFD1L gene_id:7353|Hs108|chr22         ( 307) 2073 464.4 4.7e-131
CCDS33600.2 UFD1L gene_id:7353|Hs108|chr22         ( 266) 1807 406.0 1.6e-113


>>CCDS13761.1 UFD1L gene_id:7353|Hs108|chr22              (307 aa)
 initn: 2073 init1: 2073 opt: 2073  Z-score: 2466.3  bits: 464.4 E(32554): 4.7e-131
Smith-Waterman score: 2073; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)

               10        20        30        40        50        60
pF1KE0 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSL
              250       260       270       280       290       300

              
pF1KE0 RKKGRKP
       :::::::
CCDS13 RKKGRKP
              

>>CCDS33600.2 UFD1L gene_id:7353|Hs108|chr22              (266 aa)
 initn: 1807 init1: 1807 opt: 1807  Z-score: 2151.4  bits: 406.0 E(32554): 1.6e-113
Smith-Waterman score: 1807; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KE0 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSL
       ::::::::::::::::::::::::::                                  
CCDS33 GVEPSPSPIKPGDIKRGIPNYEFKLG                                  
              250       260                                        




307 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:52:48 2016 done: Wed Nov  2 23:52:48 2016
 Total Scan time:  1.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]