FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0550, 307 aa
  1>>>pF1KE0550 307 - 307 aa - 307 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8110+/-0.000345; mu= 13.0665+/- 0.022
 mean_var=72.2112+/-14.345, 0's: 0 Z-trim(114.5): 16  B-trim: 0 in 0/55
 Lambda= 0.150929
 statistics sampled from 24355 (24369) to 24355 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.286), width:  16
 Scan time:  6.760

The best scores are:                                      opt bits E(85289)
NP_005650 (OMIM: 601754) ubiquitin fusion degradat ( 307) 2073 460.5  2e-129
XP_011528663 (OMIM: 601754) PREDICTED: ubiquitin f ( 302) 2038 452.8 3.8e-127
NP_001030324 (OMIM: 601754) ubiquitin fusion degra ( 266) 1807 402.5 4.7e-112


>>NP_005650 (OMIM: 601754) ubiquitin fusion degradation   (307 aa)
 initn: 2073 init1: 2073 opt: 2073  Z-score: 2444.7  bits: 460.5 E(85289): 2e-129
Smith-Waterman score: 2073; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)

               10        20        30        40        50        60
pF1KE0 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSL
              250       260       270       280       290       300

              
pF1KE0 RKKGRKP
       :::::::
NP_005 RKKGRKP
              

>>XP_011528663 (OMIM: 601754) PREDICTED: ubiquitin fusio  (302 aa)
 initn: 2038 init1: 2038 opt: 2038  Z-score: 2403.6  bits: 452.8 E(85289): 3.8e-127
Smith-Waterman score: 2038; 100.0% identity (100.0% similar) in 302 aa overlap (6-307:1-302)

               10        20        30        40        50        60
pF1KE0 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011      MFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KE0 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KE0 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KE0 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KE0 GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSL
         240       250       260       270       280       290     

              
pF1KE0 RKKGRKP
       :::::::
XP_011 RKKGRKP
         300  

>>NP_001030324 (OMIM: 601754) ubiquitin fusion degradati  (266 aa)
 initn: 1807 init1: 1807 opt: 1807  Z-score: 2132.7  bits: 402.5 E(85289): 4.7e-112
Smith-Waterman score: 1807; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KE0 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSL
       ::::::::::::::::::::::::::                                  
NP_001 GVEPSPSPIKPGDIKRGIPNYEFKLG                                  
              250       260                                        




307 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:52:48 2016 done: Wed Nov  2 23:52:49 2016
 Total Scan time:  6.760 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]