FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0551, 287 aa
  1>>>pF1KE0551 287 - 287 aa - 287 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3680+/-0.000847; mu= 14.1711+/- 0.051
 mean_var=57.7778+/-11.724, 0's: 0 Z-trim(105.9): 23  B-trim: 43 in 1/49
 Lambda= 0.168731
 statistics sampled from 8685 (8694) to 8685 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.267), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS14064.1 UPK3A gene_id:7380|Hs108|chr22         ( 287) 1879 465.6 1.8e-131
CCDS54539.1 UPK3A gene_id:7380|Hs108|chr22         ( 166)  621 159.3 1.7e-39


>>CCDS14064.1 UPK3A gene_id:7380|Hs108|chr22              (287 aa)
 initn: 1879 init1: 1879 opt: 1879  Z-score: 2473.7  bits: 465.6 E(32554): 1.8e-131
Smith-Waterman score: 1879; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:1-287)

               10        20        30        40        50        60
pF1KE0 MPPLWALLALGCLRFGSAVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSKEALTGTHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MPPLWALLALGCLRFGSAVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSKEALTGTHE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VYLYVLVDSAISRNASVQDSTNTPLGSTFLQTEGGRTGPYKAVAFDLIPCSDLPSLDAIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VYLYVLVDSAISRNASVQDSTNTPLGSTFLQTEGGRTGPYKAVAFDLIPCSDLPSLDAIG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DVSKASQILNAYLVRVGANGTCLWDPNFQGLCNAPLSAATEYRFKYVLVNMSTGLVEDQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DVSKASQILNAYLVRVGANGTCLWDPNFQGLCNAPLSAATEYRFKYVLVNMSTGLVEDQT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LWSDPIRTNQLTPYSTIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIALSLVDMGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LWSDPIRTNQLTPYSTIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIALSLVDMGSS
              190       200       210       220       230       240

              250       260       270       280       
pF1KE0 DGETTHDSQITQEAVPKSLGASESSYTSVNRGPPLDRAEVYSSKLQD
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DGETTHDSQITQEAVPKSLGASESSYTSVNRGPPLDRAEVYSSKLQD
              250       260       270       280       

>>CCDS54539.1 UPK3A gene_id:7380|Hs108|chr22              (166 aa)
 initn: 621 init1: 621 opt: 621  Z-score: 822.5  bits: 159.3 E(32554): 1.7e-39
Smith-Waterman score: 818; 57.5% identity (57.8% similar) in 287 aa overlap (1-287:1-166)

               10        20        30        40        50        60
pF1KE0 MPPLWALLALGCLRFGSAVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSKEALTGTHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MPPLWALLALGCLRFGSAVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSKEALTGTHE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VYLYVLVDSAISRNASVQDSTNTPLGSTFLQTEGGRTGPYKAVAFDLIPCSDLPSLDAIG
       :::::::::                                                   
CCDS54 VYLYVLVDS---------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KE0 DVSKASQILNAYLVRVGANGTCLWDPNFQGLCNAPLSAATEYRFKYVLVNMSTGLVEDQT
                                                                   
CCDS54 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KE0 LWSDPIRTNQLTPYSTIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIALSLVDMGSS
                 .:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ----------VTPYSTIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIALSLVDMGSS
                70        80        90       100       110         

              250       260       270       280       
pF1KE0 DGETTHDSQITQEAVPKSLGASESSYTSVNRGPPLDRAEVYSSKLQD
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DGETTHDSQITQEAVPKSLGASESSYTSVNRGPPLDRAEVYSSKLQD
     120       130       140       150       160      




287 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:47:39 2016 done: Wed Nov  2 23:47:39 2016
 Total Scan time:  1.930 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]