FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0571, 188 aa
  1>>>pF1KE0571 188 - 188 aa - 188 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0027+/-0.000748; mu= 15.1563+/- 0.045
 mean_var=63.2108+/-12.691, 0's: 0 Z-trim(107.8): 24  B-trim: 0 in 0/51
 Lambda= 0.161316
 statistics sampled from 9785 (9792) to 9785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.301), width:  16
 Scan time:  1.250

The best scores are:                                      opt bits E(32554)
CCDS8505.1 NINJ2 gene_id:4815|Hs108|chr12          ( 188) 1188 284.5 2.6e-77
CCDS73418.1 NINJ2 gene_id:4815|Hs108|chr12         ( 135)  810 196.5 5.9e-51
CCDS76499.1 NINJ2 gene_id:4815|Hs108|chr12         ( 106)  645 158.0 1.8e-39
CCDS6703.1 NINJ1 gene_id:4814|Hs108|chr9           ( 152)  431 108.3 2.3e-24


>>CCDS8505.1 NINJ2 gene_id:4815|Hs108|chr12               (188 aa)
 initn: 1188 init1: 1188 opt: 1188  Z-score: 1501.6  bits: 284.5 E(32554): 2.6e-77
Smith-Waterman score: 1188; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KE0 MAGLSRQLCALSHPKKAAETQTAEPGGAHAVCSRHPVRVKGLEGSEMESARENIDLQPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MAGLSRQLCALSHPKKAAETQTAEPGGAHAVCSRHPVRVKGLEGSEMESARENIDLQPGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SDPRSQPINLNHYATKKSVAESMLDVALFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 SDPRSQPINLNHYATKKSVAESMLDVALFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFGAHKTGFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFGAHKTGFLA
              130       140       150       160       170       180

               
pF1KE0 ARASRNPL
       ::::::::
CCDS85 ARASRNPL
               

>>CCDS73418.1 NINJ2 gene_id:4815|Hs108|chr12              (135 aa)
 initn: 810 init1: 810 opt: 810  Z-score: 1028.2  bits: 196.5 E(32554): 5.9e-51
Smith-Waterman score: 810; 100.0% identity (100.0% similar) in 131 aa overlap (58-188:5-135)

        30        40        50        60        70        80       
pF1KE0 AHAVCSRHPVRVKGLEGSEMESARENIDLQPGSSDPRSQPINLNHYATKKSVAESMLDVA
                                     ::::::::::::::::::::::::::::::
CCDS73                           MMYMPGSSDPRSQPINLNHYATKKSVAESMLDVA
                                         10        20        30    

        90       100       110       120       130       140       
pF1KE0 LFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRL
           40        50        60        70        80        90    

       150       160       170       180        
pF1KE0 NQLNNAATILVFFTVVINVFITAFGAHKTGFLAARASRNPL
       :::::::::::::::::::::::::::::::::::::::::
CCDS73 NQLNNAATILVFFTVVINVFITAFGAHKTGFLAARASRNPL
          100       110       120       130     

>>CCDS76499.1 NINJ2 gene_id:4815|Hs108|chr12              (106 aa)
 initn: 645 init1: 645 opt: 645  Z-score: 822.2  bits: 158.0 E(32554): 1.8e-39
Smith-Waterman score: 645; 100.0% identity (100.0% similar) in 106 aa overlap (83-188:1-106)

             60        70        80        90       100       110  
pF1KE0 NIDLQPGSSDPRSQPINLNHYATKKSVAESMLDVALFMSNAMRLKAVLEQGPSSHYYTTL
                                     ::::::::::::::::::::::::::::::
CCDS76                               MLDVALFMSNAMRLKAVLEQGPSSHYYTTL
                                             10        20        30

            120       130       140       150       160       170  
pF1KE0 VTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFG
               40        50        60        70        80        90

            180        
pF1KE0 AHKTGFLAARASRNPL
       ::::::::::::::::
CCDS76 AHKTGFLAARASRNPL
              100      

>>CCDS6703.1 NINJ1 gene_id:4814|Hs108|chr9                (152 aa)
 initn: 455 init1: 421 opt: 431  Z-score: 550.8  bits: 108.3 E(32554): 2.3e-24
Smith-Waterman score: 432; 53.1% identity (76.9% similar) in 143 aa overlap (47-175:1-143)

         20        30        40        50               60         
pF1KE0 AAETQTAEPGGAHAVCSRHPVRVKGLEGSEMESARENIDLQ-------PGSSD--P----
                                     :.:. :. .:.       ::: :  :    
CCDS67                               MDSGTEEYELNGGLPPGTPGSPDASPARWG
                                             10        20        30

             70        80        90       100       110       120  
pF1KE0 -RSQPINLNHYATKKSVAESMLDVALFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSLLL
        :  :::.::::.:::.::::::.::.:.:: .::::.:::::  .:. ::.:::.::.:
CCDS67 WRHGPINVNHYASKKSAAESMLDIALLMANASQLKAVVEQGPSFAFYVPLVVLISISLVL
               40        50        60        70        80        90

            130       140       150       160       170       180  
pF1KE0 QVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFGAHKTGFLAAR
       :. .::::. ... .::.  :. .:. ::: :: :::. ::.:.::::::..:       
CCDS67 QIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFGVQKPLMDMAP
              100       110       120       130       140       150

             
pF1KE0 ASRNPL
             
CCDS67 QQ    
             




188 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:46:13 2016 done: Wed Nov  2 22:46:13 2016
 Total Scan time:  1.250 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]