FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0573, 289 aa
  1>>>pF1KE0573 289 - 289 aa - 289 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7982+/-0.000294; mu= 10.8182+/- 0.019
 mean_var=166.8535+/-33.946, 0's: 0 Z-trim(122.8): 87  B-trim: 1937 in 1/52
 Lambda= 0.099290
 statistics sampled from 41512 (41616) to 41512 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.488), width:  16
 Scan time:  8.740

The best scores are:                                      opt bits E(85289)
NP_004634 (OMIM: 164300,602279) polyadenylate-bind ( 306)  576 93.7 4.7e-19


>>NP_004634 (OMIM: 164300,602279) polyadenylate-binding   (306 aa)
 initn: 611 init1: 504 opt: 576  Z-score: 463.0  bits: 93.7 E(85289): 4.7e-19
Smith-Waterman score: 598; 46.2% identity (66.7% similar) in 240 aa overlap (41-273:85-305)

               20        30        40        50        60        70
pF1KE0 PPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEEDQDGDAGFLLS
                                     ::  : :   ..:::.     .:: :    
NP_004 LEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG----
           60        70        80        90       100       110    

               80        90       100       110       120       130
pF1KE0 LLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTAAGQLLSPETV
               .  . : :::::: .:  ::  : . .   .:...:.. . .      : ..
NP_004 --------DGAIEDPELEAIKARVREME--EEAEKLKELQNEVEKQMNMSP----PPGNA
                      120       130         140       150          

              140       150       160       170       180       190
pF1KE0 GCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGY
       : :.  . :::.::: ::.::::::::..::::::::  :: :.:::::::::::::::.
NP_004 G-PVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGF
         160       170       180       190       200       210     

              200       210       220       230       240          
pF1KE0 AYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPFP-
       :::::. : ::.... ::.:::::: :::.::::: ::::.::::  :..  .: . .  
NP_004 AYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNS
         220       230       240       250       260       270     

          250       260        270       280         
pF1KE0 -----HSGLQGRPRLRP-QGQNRTPAALTPLWARPLPWVVVSHVIK
            .::...::: :  .:. :. .  .:                
NP_004 SRSRFYSGFNSRPRGRVYRGRARATSWYSPY               
         280       290       300                     




289 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:41:01 2016 done: Wed Nov  2 22:41:02 2016
 Total Scan time:  8.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]