Result of FASTA (ccds) for
pF1KE0579
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0579, 279 aa
1>>>pF1KE0579 279 - 279 aa - 279 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8674+/-0.000698; mu= 17.4126+/- 0.042
mean_var=62.0040+/-12.446, 0's: 0 Z-trim(109.4): 23 B-trim: 593 in 1/49
Lambda= 0.162879
statistics sampled from 10870 (10892) to 10870 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.335), width: 16
Scan time: 1.790
The best scores are: opt bits E(32554)
CCDS34697.1 GJC3 gene_id:349149|Hs108|chr7 ( 279) 1909 456.7 8.3e-129
CCDS9290.1 GJB2 gene_id:2706|Hs108|chr13 ( 226) 460 116.2 2.2e-26
CCDS14408.1 GJB1 gene_id:2705|Hs108|chrX ( 283) 451 114.1 1.1e-25
CCDS9291.1 GJB6 gene_id:10804|Hs108|chr13 ( 261) 442 112.0 4.7e-25
CCDS58547.1 GJD3 gene_id:125111|Hs108|chr17 ( 294) 440 111.5 7.1e-25
CCDS384.1 GJB3 gene_id:2707|Hs108|chr1 ( 270) 425 108.0 7.6e-24
CCDS7191.1 GJD4 gene_id:219770|Hs108|chr10 ( 370) 417 106.2 3.6e-23
CCDS383.1 GJB4 gene_id:127534|Hs108|chr1 ( 266) 409 104.2 1e-22
CCDS382.1 GJB5 gene_id:2709|Hs108|chr1 ( 273) 395 100.9 1e-21
CCDS11487.1 GJC1 gene_id:10052|Hs108|chr17 ( 396) 388 99.4 4.3e-21
CCDS1569.1 GJC2 gene_id:57165|Hs108|chr1 ( 439) 366 94.3 1.7e-19
CCDS30834.1 GJA8 gene_id:2703|Hs108|chr1 ( 433) 355 91.7 9.9e-19
CCDS9289.1 GJA3 gene_id:2700|Hs108|chr13 ( 435) 346 89.6 4.3e-18
CCDS30669.1 GJA4 gene_id:2701|Hs108|chr1 ( 333) 322 83.8 1.7e-16
CCDS929.1 GJA5 gene_id:2702|Hs108|chr1 ( 358) 318 82.9 3.5e-16
CCDS5123.1 GJA1 gene_id:2697|Hs108|chr6 ( 382) 313 81.8 8.4e-16
CCDS10040.1 GJD2 gene_id:57369|Hs108|chr15 ( 321) 308 80.5 1.7e-15
CCDS432.1 GJA9 gene_id:81025|Hs108|chr1 ( 515) 300 78.8 8.8e-15
CCDS5025.1 GJA10 gene_id:84694|Hs108|chr6 ( 543) 298 78.4 1.3e-14
CCDS5008.1 GJB7 gene_id:375519|Hs108|chr6 ( 223) 288 75.7 3.2e-14
>>CCDS34697.1 GJC3 gene_id:349149|Hs108|chr7 (279 aa)
initn: 1909 init1: 1909 opt: 1909 Z-score: 2426.0 bits: 456.7 E(32554): 8.3e-129
Smith-Waterman score: 1909; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KE0 MCGRFLRRLLAEESRRSTPVGRLLLPVLLGFRLVLLAASGPGVYGDEQSEFVCHTQQPGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MCGRFLRRLLAEESRRSTPVGRLLLPVLLGFRLVLLAASGPGVYGDEQSEFVCHTQQPGC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KAACFDAFHPLSPLRFWVFQVILVAVPSALYMGFTLYHVIWHWELSGKGKEEETLIQGRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KAACFDAFHPLSPLRFWVFQVILVAVPSALYMGFTLYHVIWHWELSGKGKEEETLIQGRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GNTDVPGAGSLRLLWAYVAQLGARLVLEGAALGLQYHLYGFQMPSSFACRREPCLGSITC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GNTDVPGAGSLRLLWAYVAQLGARLVLEGAALGLQYHLYGFQMPSSFACRREPCLGSITC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 NLSRPSEKTIFLKTMFGVSGFCLLFTFLELVLLGLGRWWRTWKHKSSSSKYFLTSESTRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NLSRPSEKTIFLKTMFGVSGFCLLFTFLELVLLGLGRWWRTWKHKSSSSKYFLTSESTRR
190 200 210 220 230 240
250 260 270
pF1KE0 HKKATDSLPVVETKEQFQEAVPGRSLAQEKQRPVGPRDA
:::::::::::::::::::::::::::::::::::::::
CCDS34 HKKATDSLPVVETKEQFQEAVPGRSLAQEKQRPVGPRDA
250 260 270
>>CCDS9290.1 GJB2 gene_id:2706|Hs108|chr13 (226 aa)
initn: 360 init1: 360 opt: 460 Z-score: 587.1 bits: 116.2 E(32554): 2.2e-26
Smith-Waterman score: 460; 36.8% identity (68.4% similar) in 212 aa overlap (6-213:6-213)
10 20 30 40 50 60
pF1KE0 MCGRFLRRLLAEESRRSTPVGRLLLPVLLGFRLVLLAASGPGVYGDEQSEFVCHTQQPGC
:. .:. ...:: .:.. : ::. ::...:.... :.::::..:::.: ::::
CCDS92 MDWGTLQTILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPGC
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 KAACFDAFHPLSPLRFWVFQVILVAVPSALYMGFTLY--HVIWHWELSGKGKEEETLIQG
: .:.: . :.: .:.:..:.:.:..:. : . : : . ..:. : : :.
CCDS92 KNVCYDHYFPISHIRLWALQLIFVSTPALLVAMHVAYRRHEKKRKFIKGEIKSEFKDIE-
70 80 90 100 110
120 130 140 150 160 170
pF1KE0 REGNTD-VPGAGSLRLLWAYVAQLGARLVLEGAALGLQYHLY-GFQMPSSFACRREPCLG
: .:. : ::: :.:.... :...:.: . . : .: ::.: : :: .
CCDS92 -EIKTQKVRIEGSL--WWTYTSSIFFRVIFEAAFMYVFYVMYDGFSMQRLVKCNAWPCPN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SITCNLSRPSEKTIFLKTMFGVSGFCLLFTFLELVLLGLGRWWRTWKHKSSSSKYFLTSE
.. : .:::.:::.: :..:::.:.:.. :: :
CCDS92 TVDCFVSRPTEKTVFTVFMIAVSGICILLNVTELCYLLIRYCSGKSKKPV
180 190 200 210 220
240 250 260 270
pF1KE0 STRRHKKATDSLPVVETKEQFQEAVPGRSLAQEKQRPVGPRDA
>>CCDS14408.1 GJB1 gene_id:2705|Hs108|chrX (283 aa)
initn: 443 init1: 282 opt: 451 Z-score: 574.3 bits: 114.1 E(32554): 1.1e-25
Smith-Waterman score: 451; 36.0% identity (67.8% similar) in 214 aa overlap (6-213:6-212)
10 20 30 40 50 60
pF1KE0 MCGRFLRRLLAEESRRSTPVGRLLLPVLLGFRLVLLAASGPGVYGDEQSEFVCHTQQPGC
: ::. .:.:: .::. : :.. ::...:.... .:.:::.: :.:.: ::::
CCDS14 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 KAACFDAFHPLSPLRFWVFQVILVAVPSALYMGFTLYHVIWHWE-----LSGKGKEEETL
...:.: : :.: .:.: .:.:::..: :: ... . : : : : :.: . :
CCDS14 NSVCYDQFFPISHVRLWSLQLILVSTP-ALLVAMHVAHQ-QHIEKKMLRLEGHG-DPLHL
70 80 90 100 110
120 130 140 150 160 170
pF1KE0 IQGREGNTDVPGAGSLRLLWAYVAQLGARLVLEGAALGLQYHLY-GFQMPSSFACRREPC
. .. .. . :. : :.:: .. ::..:.. . . : :: :. : : ::
CCDS14 EEVKRHKVHISGT----LWWTYVISVVFRLLFEAVFMYVFYLLYPGYAMVRLVKCDVYPC
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 LGSITCNLSRPSEKTIFLKTMFGVSGFCLLFTFLELVLLGLGRWWRTWKHKSSSSKYFLT
... : .:::.:::.: :...::.:.... :.: :
CCDS14 PNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIIRACARRAQRRSNPPSRKGS
180 190 200 210 220 230
240 250 260 270
pF1KE0 SESTRRHKKATDSLPVVETKEQFQEAVPGRSLAQEKQRPVGPRDA
CCDS14 GFGHRLSPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
240 250 260 270 280
>>CCDS9291.1 GJB6 gene_id:10804|Hs108|chr13 (261 aa)
initn: 364 init1: 334 opt: 442 Z-score: 563.3 bits: 112.0 E(32554): 4.7e-25
Smith-Waterman score: 442; 28.8% identity (68.4% similar) in 250 aa overlap (6-247:6-251)
10 20 30 40 50 60
pF1KE0 MCGRFLRRLLAEESRRSTPVGRLLLPVLLGFRLVLLAASGPGVYGDEQSEFVCHTQQPGC
:. ... ...:: .:.. . :.. ::...:.... :.:::: .:::.: ::::
CCDS92 MDWGTLHTFIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPGC
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 KAACFDAFHPLSPLRFWVFQVILVAVPS---ALYMGFTLYHVIWHWELSGKGKEEETLIQ
: .:.: : :.: .:.:..:.:.:..:. :..... ... ... . : .. . . .
CCDS92 KNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHETTRKFRRGEKRNDFKDIED
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 GREGNTDVPGAGSLRLLWAYVAQLGARLVLEGAALGLQYHLY-GFQMPSSFACRREPCLG
.. .. . :. : :.:.... :...:.: . . : :: :...: . : .:: .
CCDS92 IKKQKVRIEGS----LWWTYTSSIFFRIIFEAAFMYVFYFLYNGYHLPWVLKCGIDPCPN
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SITCNLSRPSEKTIFLKTMFGVSGFCLLFTFLELVLLGLG----RWWRTWKHKSSSSKYF
. : .:::.:::.: :...: .:.:.. :: : : : :. .:. .. .
CCDS92 LVDCFISRPTEKTVFTIFMISASVICMLLNVAELCYLLLKVCFRRSKRAQTQKNHPNHAL
180 190 200 210 220 230
240 250 260 270
pF1KE0 LTSESTRRHKKATDSLPVVETKEQFQEAVPGRSLAQEKQRPVGPRDA
:.... .. .::
CCDS92 KESKQNEMNELISDSGQNAITGFPS
240 250 260
>>CCDS58547.1 GJD3 gene_id:125111|Hs108|chr17 (294 aa)
initn: 456 init1: 291 opt: 440 Z-score: 560.1 bits: 111.5 E(32554): 7.1e-25
Smith-Waterman score: 450; 32.6% identity (57.8% similar) in 270 aa overlap (5-273:6-262)
10 20 30 40 50
pF1KE0 MCGRFLRRLLAEESRRSTPVGRLLLPVLLGFRLVLLAASGPGVYGDEQSEFVCHTQQPG
:: :: . .: :::: : :.: ::...::. : .:. ::: ::::.: :::
CCDS58 MGEWAFLGSLLDAVQLQSPLVGRLWLVVMLIFRILVLATVGGAVFEDEQEEFVCNTLQPG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 CKAACFDAFHPLSPLRFWVFQVILVAVPSALYMGFTLYHVIWHWELSGKGKEEETLIQGR
:. .:.: :.: :::.:...:...: .:.. ...... . .: .. :
CCDS58 CRQTCYDRAFPVSHYRFWLFHILLLSAPPVLFVVYSMHRA---GKEAGGAEAAAQCAPGL
70 80 90 100 110
120 130 140 150 160 170
pF1KE0 EGNTDVPGA-GSLRLLWAYVAQLGARLVLEGAALGLQYHLYGFQMPSSFACRREPCLGSI
.: : . : :. ... ::. : . :: : ::::.. ::: :: ..
CCDS58 PEAQCAPCALRARRARRCYLLSVALRLLAELTFLGGQALLYGFRVAPHFACAGPPCPHTV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 TCNLSRPSEKTIFLKTMFGVSGFCLLFTFLELVLLGLGRWWRTWKHKSSSSKYFLTSEST
: .:::.:::.:. .:.:. . :.. :: : :: . ... .. .
CCDS58 DCFVSRPTEKTVFVLFYFAVGLLSALLSVAELGHL-------LWKGRPRAGER--DNRCN
180 190 200 210 220
240 250 260 270
pF1KE0 RRHKKATDSLPVVETKEQFQEAVPGRSLAQEKQRPVGPRDA
: :..: :: :.:.: . : :
CCDS58 RAHEEAQKLLPPPPPPPP-PPALPSRRPGPEPCAPPAYAHPAPASLRECGSGRGKASPAT
230 240 250 260 270 280
CCDS58 GRRDLAI
290
>>CCDS384.1 GJB3 gene_id:2707|Hs108|chr1 (270 aa)
initn: 399 init1: 262 opt: 425 Z-score: 541.6 bits: 108.0 E(32554): 7.6e-24
Smith-Waterman score: 425; 31.0% identity (57.8% similar) in 277 aa overlap (4-276:4-269)
10 20 30 40 50 60
pF1KE0 MCGRFLRRLLAEESRRSTPVGRLLLPVLLGFRLVLLAASGPGVYGDEQSEFVCHTQQPGC
. :. ::. .. :: ::. : :.. ::... .... :.::::..: :.:.::::
CCDS38 MDWKTLQALLSGVNKYSTAFGRIWLSVVFVFRVLVYVVAAERVWGDEQKDFDCNTKQPGC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KAACFDAFHPLSPLRFWVFQVILVAVPSALYMGFTLYHVIWHWELSGKGKEEETLIQGRE
.:.: . :.: .:.:..:.:.:. :: : .. :: .. : . ... .: .
CCDS38 TNVCYDNYFPISNIRLWALQLIFVTCPSLL----VILHVAYREERERRHRQK----HGDQ
70 80 90 100 110
130 140 150 160 170
pF1KE0 GNTDVPGAGSLR--LLWAYVAQLGARLVLEGAALGLQYHLY-GFQMPSSFACRR-EPCLG
.::. . : :.:. .: .:..: : : . :. ::.:: : :: .
CCDS38 CAKLYDNAGKKHGGLWWTYLFSLIFKLIIEFLFLYLLHTLWHGFNMPRLVQCANVAPCPN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SITCNLSRPSEKTIFLKTMFGVSGFCLLFTFLELVLLGLGRWWRTWKHKSSSSKYFLTSE
. : ..::.:: :: : :.:. :...:. :: : : : ::.. :
CCDS38 IVDCYIARPTEKKIFTYFMVGASAVCIVLTICELCYLICHRVLRGL-HKDKPRGGCSPSS
180 190 200 210 220 230
240 250 260 270
pF1KE0 STRRHKKATDSLPVVETKEQFQEAVPGRSLAQEKQRPVGPRDA
:. : . .::. : . :: . : . . :
CCDS38 SASRASTCRCHHKLVEAGEV--DPDPGNNKLQASAPNLTPI
240 250 260 270
>>CCDS7191.1 GJD4 gene_id:219770|Hs108|chr10 (370 aa)
initn: 437 init1: 253 opt: 417 Z-score: 529.4 bits: 106.2 E(32554): 3.6e-23
Smith-Waterman score: 427; 31.6% identity (59.4% similar) in 256 aa overlap (18-263:19-267)
10 20 30 40 50
pF1KE0 MCGRFLRRLLAEESRRSTPVGRLLLPVLLGFRLVLLAASGPGVYGDEQSEFVCHTQQPG
: ::.: . . . .:..... .: :: ::: .:::.: :::
CCDS71 MEGVDLLGFLIITLNCNVTMVGKLWFVLTMLLRMLVIVLAGRPVYQDEQERFVCNTLQPG
10 20 30 40 50 60
60 70 80 90 100
pF1KE0 CKAACFDAFHPLSPLRFWVFQVILVAVPSALYMGFTLYHVIWHWELSGK----------G
: .:.:.: :.: ::::..: . : .:::.. ..:.. :. . :
CCDS71 CANVCYDVFSPVSHLRFWLIQGVCVLLPSAVFSVYVLHRGATLAALGPRRCPDPREPASG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 KEEETLIQGREGNTDVPGAGSLRLLWAYVAQLGARLVLEGAALGLQYHLYGFQMPSSFAC
... :..:. .:: .. .:. .: : .::.: .:.: :.:: :..: :
CCDS71 QRRCPRPFGERGGLQVPDFSA-----GYIIHLLLRTLLEAAFGALHYFLFGFLAPKKFPC
130 140 150 160 170
170 180 190 200 210 220
pF1KE0 RREPCLGSITCNLSRPSEKTIFLKTMFGVSGFCLLFTFLELVLLGLGRWWRTWKHKSSSS
: :: : . : .:::.::.... ...::.. .:. . .:: : : .: :
CCDS71 TRPPCTGVVDCYVSRPTEKSLLMLFLWAVSALSFLLGLADLVCSLRRRMRRRPGPPTSPS
180 190 200 210 220 230
230 240 250 260 270
pF1KE0 KYFLTSESTRRHKKATDSLPVVETKEQFQEAVPGRSLAQEKQRPVGPRDA
.. : . . . :: : :. : ::
CCDS71 IRKQSGASGHAEGRRTDEEGGRE--EEGAPAPPGARAGGEGAGSPRRTSRVSGHTKIPDE
240 250 260 270 280 290
CCDS71 DESEVTSSASEKLGRQPRGRPHREAAQDPRGSGSEEQPSAAPSRLAAPPSCSSLQPPDPP
300 310 320 330 340 350
>>CCDS383.1 GJB4 gene_id:127534|Hs108|chr1 (266 aa)
initn: 365 init1: 264 opt: 409 Z-score: 521.3 bits: 104.2 E(32554): 1e-22
Smith-Waterman score: 409; 33.0% identity (66.5% similar) in 212 aa overlap (5-213:5-208)
10 20 30 40 50 60
pF1KE0 MCGRFLRRLLAEESRRSTPVGRLLLPVLLGFRLVLLAASGPGVYGDEQSEFVCHTQQPGC
::. ::. .. :: ..:. : :.. ::... .... :. :::..:::.:.::::
CCDS38 MNWAFLQGLLSGVNKYSTVLSRIWLSVVFIFRVLVYVVAAEEVWDDEQKDFVCNTKQPGC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KAACFDAFHPLSPLRFWVFQVILVAVPSALYMGFTLYHVIWHWELSGKGKEEETLIQGRE
.:.: : :.: .:.:..:.:::. :: : ...:: .. : : . : .: .
CCDS38 PNVCYDEFFPVSHVRLWALQLILVTCPSLL----VVMHVAYREERERKHH----LKHGPN
70 80 90 100 110
130 140 150 160 170
pF1KE0 GNTDVPGAGSLR--LLWAYVAQLGARLVLEGAALGLQYHLY-GFQMPSSFACRREPCLGS
. . . .. : : :.:. .: . ..... : . ..:: ..:: :: ::: .
CCDS38 APSLYDNLSKKRGGLWWTYLLSLIFKAAVDAGFLYIFHRLYKDYDMPRVVACSVEPCPHT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 ITCNLSRPSEKTIFLKTMFGVSGFCLLFTFLELVLLGLGRWWRTWKHKSSSSKYFLTSES
. : .:::.:: .: : ....:.:... :. :
CCDS38 VDCYISRPTEKKVFTYFMVTTAAICILLNLSEVFYLVGKRCMEIFGPRHRRPRCRECLPD
180 190 200 210 220 230
240 250 260 270
pF1KE0 TRRHKKATDSLPVVETKEQFQEAVPGRSLAQEKQRPVGPRDA
CCDS38 TCPPYVLSQGGHPEDGNSVLMKAGSAPVDAGGYP
240 250 260
>>CCDS382.1 GJB5 gene_id:2709|Hs108|chr1 (273 aa)
initn: 377 init1: 242 opt: 395 Z-score: 503.4 bits: 100.9 E(32554): 1e-21
Smith-Waterman score: 395; 32.0% identity (65.0% similar) in 206 aa overlap (9-213:9-208)
10 20 30 40 50 60
pF1KE0 MCGRFLRRLLAEESRRSTPVGRLLLPVLLGFRLVLLAASGPGVYGDEQSEFVCHTQQPGC
::. .. :: ::. : ... ::... ... :..:....: :.:.::::
CCDS38 MNWSIFEGLLSGVNKYSTAFGRIWLSLVFIFRVLVYLVTAERVWSDDHKDFDCNTRQPGC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KAACFDAFHPLSPLRFWVFQVILVAVPSALYMGFTLYHVIWHWELSGKGKEEETLIQGRE
. .::: : :.: .:.:..:.:::. :: : ...:: .. . .: . .::
CCDS38 SNVCFDEFFPVSHVRLWALQLILVTCPSLL----VVMHVAYREVQEKRHREAHGENSGRL
70 80 90 100 110
130 140 150 160 170
pF1KE0 GNTDVPGAGSLRLLWAYVAQLGARLVLEGAALGLQYHLYG-FQMPSSFACRREPCLGSIT
. :: : :.:: .: . .. : : . . .: . .: :. .:: . .
CCDS38 YLN--PGKKRGGLWWTYVCSLVFKASVDIAFLYVFHSFYPKYILPPVVKCHADPCPNIVD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 CNLSRPSEKTIFLKTMFGVSGFCLLFTFLELVLLGLGRWWRTWKHKSSSSKYFLTSESTR
: .:.::::.:: : .....:.:....::. :
CCDS38 CFISKPSEKNIFTLFMVATAAICILLNLVELIYLVSKRCHECLAARKAQAMCTGHHPHGT
180 190 200 210 220 230
240 250 260 270
pF1KE0 RHKKATDSLPVVETKEQFQEAVPGRSLAQEKQRPVGPRDA
CCDS38 TSSCKQDDLLSGDLIFLGSDSHPPLLPDRPRDHVKKTIL
240 250 260 270
>>CCDS11487.1 GJC1 gene_id:10052|Hs108|chr17 (396 aa)
initn: 642 init1: 386 opt: 388 Z-score: 492.2 bits: 99.4 E(32554): 4.3e-21
Smith-Waterman score: 595; 41.8% identity (63.7% similar) in 256 aa overlap (1-216:1-256)
10 20 30 40 50 60
pF1KE0 MCGRFLRRLLAEESRRSTPVGRLLLPVLLGFRLVLLAASGPGVYGDEQSEFVCHTQQPGC
: :: ::: : .:: ::.. : ::. ::.:: :..: ..: ::::.:::.:.::::
CCDS11 MSWSFLTRLLEEIHNHSTFVGKIWLTVLIVFRIVLTAVGGESIYYDEQSKFVCNTEQPGC
10 20 30 40 50 60
70 80 90 100
pF1KE0 KAACFDAFHPLSPLRFWVFQVILVAVPSALYMGFTLYHV--IWHWELSGKG---------
. .:.::: ::: .::::::.::::.::..:.:...... . : : . :.
CCDS11 ENVCYDAFAPLSHVRFWVFQIILVATPSVMYLGYAIHKIAKMEHGEADKKAARSKPYAMR
70 80 90 100 110 120
110 120 130 140
pF1KE0 -KEEETLIQGREGNTDVP-------------------------GAGSLR---LLWAYVAQ
:....: . .: : . : : .: :. :: :
CCDS11 WKQHRALEETEEDNEEDPMMYPEMELESDKENKEQSQPKPKHDGRRRIREDGLMKIYVLQ
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE0 LGARLVLEGAALGLQYHLYGFQMPSSFACRREPCLGSITCNLSRPSEKTIFLKTMFGVSG
: :: :.: . : :: :::::. ..: : :: .: : .:::.:::::: :.::.:
CCDS11 LLARTVFEVGFLIGQYFLYGFQVHPFYVCSRLPCPHKIDCFISRPTEKTIFLLIMYGVTG
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE0 FCLLFTFLELVLLGLGRWWRTWKHKSSSSKYFLTSESTRRHKKATDSLPVVETKEQFQEA
.:::... :.. ::.:
CCDS11 LCLLLNIWEMLHLGFGTIRDSLNSKRRELEDPGAYNYPFTWNTPSAPPGYNIAVKPDQIQ
250 260 270 280 290 300
279 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 22:10:51 2016 done: Wed Nov 2 22:10:51 2016
Total Scan time: 1.790 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]