Result of FASTA (ccds) for
pF1KE0586
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0586, 165 aa
1>>>pF1KE0586 165 - 165 aa - 165 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8389+/-0.0014; mu= 10.6697+/- 0.085
mean_var=329.4162+/-63.562, 0's: 0 Z-trim(111.8): 123 B-trim: 28 in 1/50
Lambda= 0.070665
statistics sampled from 12542 (12659) to 12542 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.389), width: 16
Scan time: 1.550
The best scores are: opt bits E(32554)
CCDS41682.1 7 gene_id:440050|Hs108|chr11 ( 165) 1476 162.8 9e-41
CCDS41683.1 8 gene_id:57830|Hs108|chr11 ( 187) 1284 143.3 7.4e-35
CCDS31331.1 2 gene_id:440021|Hs108|chr11 ( 177) 1090 123.5 6.5e-29
CCDS41591.1 3 gene_id:387266|Hs108|chr11 ( 238) 1049 119.5 1.4e-27
CCDS53677.1 9 gene_id:3846|Hs108|chr11 ( 169) 1041 118.4 2e-27
CCDS31332.1 6 gene_id:440023|Hs108|chr11 ( 129) 1021 116.2 7.3e-27
CCDS41685.1 11 gene_id:440051|Hs108|chr11 ( 156) 1005 114.7 2.5e-26
CCDS41684.1 10 gene_id:387273|Hs108|chr11 ( 202) 969 111.2 3.6e-25
CCDS31330.1 1 gene_id:387264|Hs108|chr11 ( 278) 910 105.4 2.7e-23
CCDS41592.1 5 gene_id:439915|Hs108|chr11 ( 237) 812 95.3 2.6e-20
CCDS42331.1 3 gene_id:85290|Hs108|chr17 ( 195) 577 71.2 3.8e-13
CCDS54124.1 9 gene_id:100132386|Hs108|chr17 ( 210) 547 68.2 3.3e-12
CCDS32649.1 12 gene_id:83755|Hs108|chr17 ( 201) 522 65.6 1.9e-11
CCDS11383.1 4 gene_id:84616|Hs108|chr17 ( 166) 508 64.1 4.6e-11
CCDS45675.1 11 gene_id:653240|Hs108|chr17 ( 195) 509 64.3 4.6e-11
CCDS32650.1 5 gene_id:85289|Hs108|chr17 ( 181) 502 63.5 7.3e-11
>>CCDS41682.1 7 gene_id:440050|Hs108|chr11 (165 aa)
initn: 1476 init1: 1476 opt: 1476 Z-score: 845.5 bits: 162.8 E(32554): 9e-41
Smith-Waterman score: 1476; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)
10 20 30 40 50 60
pF1KE0 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPC
70 80 90 100 110 120
130 140 150 160
pF1KE0 CCQSSCCKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
:::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CCQSSCCKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
130 140 150 160
>>CCDS41683.1 8 gene_id:57830|Hs108|chr11 (187 aa)
initn: 1914 init1: 1255 opt: 1284 Z-score: 739.2 bits: 143.3 E(32554): 7.4e-35
Smith-Waterman score: 1284; 90.7% identity (91.9% similar) in 161 aa overlap (1-161:1-154)
10 20 30 40 50 60
pF1KE0 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSC
::::::: ::::::::::::::::::::::::.:::::::::::::::::::::
CCDS41 MGCCGCS-------GGCGSGCGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSCGSC
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 GGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPC
:::::: :::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GGSKGGRGSCGGSKGDCGSCGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPC
60 70 80 90 100 110
130 140 150 160
pF1KE0 CCQSSCCKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
: :::::::: :::::::::::::::.::::::::: : ::
CCDS41 CSQSSCCKPCSCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCS
120 130 140 150 160 170
CCDS41 QSSCCVPICCQCKI
180
>>CCDS31331.1 2 gene_id:440021|Hs108|chr11 (177 aa)
initn: 2366 init1: 1043 opt: 1090 Z-score: 632.5 bits: 123.5 E(32554): 6.5e-29
Smith-Waterman score: 1187; 77.4% identity (80.1% similar) in 186 aa overlap (1-165:1-177)
10 20 30
pF1KE0 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGS--------------SC--C-----VPV
:::::::.:::::::::::.::::::::::::: :: : :::
CCDS31 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 CCCKPVCCCVPACSCSSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCYK
::::::: ::::::.::::::::::::::::::::::::::::::::::::::: :: :
CCDS31 CCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQSSCCK
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 PCCCSSGCGSSCCQSSCCKPCCCQSSCCKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPV
:::::::::::::::::::::::::::: : :: :::::.::: ::.:::::
CCDS31 PCCCSSGCGSSCCQSSCCKPCCCQSSCCVPVCC---------QSSCCKPCCCQSNCCVPV
130 140 150 160 170
160
pF1KE0 CCQCKI
::::::
CCDS31 CCQCKI
>>CCDS41591.1 3 gene_id:387266|Hs108|chr11 (238 aa)
initn: 2348 init1: 866 opt: 1049 Z-score: 608.8 bits: 119.5 E(32554): 1.4e-27
Smith-Waterman score: 1161; 72.6% identity (74.6% similar) in 197 aa overlap (1-153:1-197)
10 20 30 40 50 60
pF1KE0 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSC
::: ::: ::::.::::::.::::::: :::::.::::::::::::::::::::::::::
CCDS41 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
10 20 30 40 50 60
70 80
pF1KE0 GGSKGGCGSCGGSKGGCGSCGGSKGGCGS-------------------------------
::::: :::::: ::::::::::::::::
CCDS41 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
70 80 90 100 110 120
90 100 110 120 130
pF1KE0 ---CGCSQCSCYKPCCCSSGCGSSCCQSSCCKP----------CCCQSSCCKPCCCSSGC
:::::::::::::::::::::::::::::: :: ::::::::::::::
CCDS41 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
130 140 150 160 170 180
140 150 160
pF1KE0 GSSCCQSSCCNPCCSQSSCCVPVCCQCKI
::::::::::.::::::
CCDS41 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
190 200 210 220 230
>>CCDS53677.1 9 gene_id:3846|Hs108|chr11 (169 aa)
initn: 1038 init1: 652 opt: 1041 Z-score: 605.7 bits: 118.4 E(32554): 2e-27
Smith-Waterman score: 1106; 72.8% identity (75.5% similar) in 184 aa overlap (1-165:1-169)
10 20 30 40 50 60
pF1KE0 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSC
::::::: ::::.:::: :.::.::::: ::: :::.:: ::::::::::::::::::
CCDS53 MGCCGCSGGCGSSCGGCDSSCGSCGSGCRGCGPSCCAPVYCCKPVCCCVPACSCSSCG--
10 20 30 40 50
70 80 90 100 110
pF1KE0 GGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKP-
: :::::::::::::::::::::: ::::::::::::::: :::::
CCDS53 -------------KRGCGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQCSCCKPY
60 70 80 90 100
120 130 140 150 160
pF1KE0 C------------------CCQSSCCKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPVCC
: ::::::::::: ::::::::::::::.:::::: ::::::
CCDS53 CSQCSCCKPCCSSSGRGSSCCQSSCCKPCCSSSGCGSSCCQSSCCKPCCSQSRCCVPVCY
110 120 130 140 150 160
pF1KE0 QCKI
::::
CCDS53 QCKI
>>CCDS31332.1 6 gene_id:440023|Hs108|chr11 (129 aa)
initn: 992 init1: 992 opt: 1021 Z-score: 595.7 bits: 116.2 E(32554): 7.3e-27
Smith-Waterman score: 1021; 87.9% identity (90.2% similar) in 132 aa overlap (1-132:1-125)
10 20 30 40 50 60
pF1KE0 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSC
::::::: ::::::::::::::::::::::::.:::::::::::::::.:::::
CCDS31 MGCCGCS-------GGCGSGCGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCTSCGSC
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 GGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPC
::::: ::::::::::::::::::::::::::::::: ::: ::::::::::::::::::
CCDS31 GGSKGCCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCCKPCYCSSGCGSSCCQSSCCKPC
60 70 80 90 100 110
130 140 150 160
pF1KE0 CCQSSCCKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
: :.::: : ::
CCDS31 CSQASCCVPICCQCKI
120
>>CCDS41685.1 11 gene_id:440051|Hs108|chr11 (156 aa)
initn: 1970 init1: 941 opt: 1005 Z-score: 586.2 bits: 114.7 E(32554): 2.5e-26
Smith-Waterman score: 1166; 81.3% identity (84.9% similar) in 166 aa overlap (1-165:1-156)
10 20 30 40 50 60
pF1KE0 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSC
::::::: :::::::::::: :::::::::::::::::.:::::::::::::::::::::
CCDS41 MGCCGCSGGCGSGCGGCGSGSGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSCGSC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPC
:::::::::::. :::::::::::: .: :::: :::::: :::::: :::
CCDS41 GGSKGGCGSCGS----------SKGGCGSCGCSQSNCCKPCCSSSGCGSFCCQSSCSKPC
70 80 90 100 110
130 140 150 160
pF1KE0 CCQSSCCKPCCCSSGC-GSSCCQSSCCNPCCSQSSCCVPVCCQCKI
:::::::. ::. : :::::::: .::: ::::::::::::::
CCDS41 CCQSSCCQSSCCKPCCCQSSCCQSSCFKPCCCQSSCCVPVCCQCKI
120 130 140 150
>>CCDS41684.1 10 gene_id:387273|Hs108|chr11 (202 aa)
initn: 1060 init1: 875 opt: 969 Z-score: 565.4 bits: 111.2 E(32554): 3.6e-25
Smith-Waterman score: 1176; 69.3% identity (70.8% similar) in 212 aa overlap (1-165:1-202)
10 20 30 40 50
pF1KE0 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGG-------CGSSCCVPVCCCKPVCCCVPACS
::::::: :::::::::::::::::::::: :::::::::::::::::::::::
CCDS41 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGYGSGCGGCGSSCCVPVCCCKPVCCCVPACS
10 20 30 40 50 60
60 70
pF1KE0 CSSCGSCGGSKG----------------------------------------GCGSCGGS
:::::::::::: ::::::::
CCDS41 CSSCGSCGGSKGDCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGGS
70 80 90 100 110 120
80 90 100 110 120 130
pF1KE0 KGGCGSCGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPCCCQSSCCKPCCCS
::::::::::::::::::::::.: ::::::::::: :::::::.::::::::: : ::
CCDS41 KGGCGSCGGSKGGCGSCGCSQCNCCKPCCCSSGCGS-CCQSSCCNPCCCQSSCCVPVCC-
130 140 150 160 170
140 150 160
pF1KE0 SGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
:::::.::: ::::::::::::::
CCDS41 --------QSSCCKPCCCQSSCCVPVCCQCKI
180 190 200
>>CCDS31330.1 1 gene_id:387264|Hs108|chr11 (278 aa)
initn: 1294 init1: 600 opt: 910 Z-score: 531.7 bits: 105.4 E(32554): 2.7e-23
Smith-Waterman score: 1080; 70.9% identity (77.2% similar) in 189 aa overlap (2-165:90-278)
10 20
pF1KE0 MGCCGCSEG-CGS------GCGGCGSGCGGC
: :: :.: ::: :::.::.. :::
CCDS31 SCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGC
60 70 80 90 100 110
30 40 50 60 70
pF1KE0 GSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCG-----SCGGSKGGCGSCGGSKGGCGS
::::::::::::::::::::.::::::::::::: ::: :::.:::::::::::::
CCDS31 GSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGS
120 130 140 150 160 170
80 90 100 110 120
pF1KE0 CGGSKGGCGSCGCSQCSCYKPCC-CSSGCGSS--CCQSSCCKPC----------CCQSSC
::: :::::::: :. .: . : :.:::: ::. : : : : : ::
CCDS31 CGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSC
180 190 200 210 220 230
130 140 150 160
pF1KE0 CKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
::::::::::::::::::::.::::::::::::::::::
CCDS31 CKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
240 250 260 270
>--
initn: 735 init1: 442 opt: 624 Z-score: 374.1 bits: 76.3 E(32554): 1.6e-14
Smith-Waterman score: 624; 80.9% identity (83.0% similar) in 94 aa overlap (1-87:1-89)
10 20 30 40 50
pF1KE0 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGS-------SCCVPVCCCKPVCCCVPACS
::::::: ::::.:::::::::::::::::::: :::::::::::::: ::.::
CCDS31 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 CSSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQ
::::: :::::: :::::::::::: ::::
CCDS31 CSSCG-----KGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGS
70 80 90 100 110
120 130 140 150 160
pF1KE0 SSCCKPCCCQSSCCKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
CCDS31 KGGCGSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKG
120 130 140 150 160 170
>>CCDS41592.1 5 gene_id:439915|Hs108|chr11 (237 aa)
initn: 728 init1: 728 opt: 812 Z-score: 478.3 bits: 95.3 E(32554): 2.6e-20
Smith-Waterman score: 1112; 70.3% identity (72.3% similar) in 202 aa overlap (9-165:41-237)
10 20 30
pF1KE0 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGSSCCVP
::: ::::::::: .:::::::.::::
CCDS41 GSGCGGRGSGCGGCGSGCGGCGSGCGGCGSGCG-GCGGCGSGC----AGCGGCGSGCCVP
20 30 40 50 60
40 50 60 70
pF1KE0 VCCCKPVCCCVPACSCSSCG-------------------------SCGGSKGGCGSCGGS
::::::.::::::::::::: :::::::::::::::
CCDS41 VCCCKPMCCCVPACSCSSCGKGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGGCGSCGGS
70 80 90 100 110 120
80 90 100 110 120
pF1KE0 KGGCGSCGGSKGGCGSCG----------CSQCSCYKPCCCSSGCGSSCCQSSCCKP-CC-
:::::::::::::::::: ::: :: ::::::::::::::::::::: ::
CCDS41 KGGCGSCGGSKGGCGSCGGSKGGCGSYGCSQSSCCKPCCCSSGCGSSCCQSSCCKPYCCQ
130 140 150 160 170 180
130 140 150 160
pF1KE0 --------CQSSCCKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
::::::::: : :::::::::::: .::: ::::::::::::::
CCDS41 SSCCKPYCCQSSCCKPCSCFSGCGSSCCQSSCYKPCCCQSSCCVPVCCQCKI
190 200 210 220 230
165 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 21:12:02 2016 done: Wed Nov 2 21:12:02 2016
Total Scan time: 1.550 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]