FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0603, 156 aa
  1>>>pF1KE0603 156 - 156 aa - 156 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8802+/-0.0009; mu= 9.5508+/- 0.054
 mean_var=112.3238+/-25.045, 0's: 0 Z-trim(107.9): 134  B-trim: 0 in 0/52
 Lambda= 0.121015
 statistics sampled from 9703 (9867) to 9703 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.303), width:  16
 Scan time:  1.340

The best scores are:                                      opt bits E(32554)
CCDS3323.1 NCBP2 gene_id:22916|Hs108|chr3          ( 156) 1053 194.1 2.9e-50
CCDS77878.1 NCBP2 gene_id:22916|Hs108|chr3         ( 138)  885 164.7 1.8e-41
CCDS46986.1 NCBP2 gene_id:22916|Hs108|chr3         ( 103)  441 87.1 3.2e-18


>>CCDS3323.1 NCBP2 gene_id:22916|Hs108|chr3               (156 aa)
 initn: 1053 init1: 1053 opt: 1053  Z-score: 1015.8  bits: 194.1 E(32554): 2.9e-50
Smith-Waterman score: 1053; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)

               10        20        30        40        50        60
pF1KE0 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK
               70        80        90       100       110       120

              130       140       150      
pF1KE0 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
       ::::::::::::::::::::::::::::::::::::
CCDS33 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
              130       140       150      

>>CCDS77878.1 NCBP2 gene_id:22916|Hs108|chr3              (138 aa)
 initn: 885 init1: 885 opt: 885  Z-score: 858.0  bits: 164.7 E(32554): 1.8e-41
Smith-Waterman score: 885; 98.5% identity (99.2% similar) in 132 aa overlap (25-156:7-138)

               10        20        30        40        50        60
pF1KE0 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF
                               . ::::::::::::::::::::::::::::::::::
CCDS77                   MVLRKLYAGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF
                                 10        20        30        40  

               70        80        90       100       110       120
pF1KE0 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK
             50        60        70        80        90       100  

              130       140       150      
pF1KE0 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
       ::::::::::::::::::::::::::::::::::::
CCDS77 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
            110       120       130        

>>CCDS46986.1 NCBP2 gene_id:22916|Hs108|chr3              (103 aa)
 initn: 441 init1: 441 opt: 441  Z-score: 440.7  bits: 87.1 E(32554): 3.2e-18
Smith-Waterman score: 573; 66.0% identity (66.0% similar) in 156 aa overlap (1-156:1-103)

               10        20        30        40        50        60
pF1KE0 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF
       :::::::::::::::::::::::::::::::::::::::                 :   
CCDS46 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKS-----------------Y---
               10        20        30                         40   

               70        80        90       100       110       120
pF1KE0 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK
                                        :::::::::::::::::::::::::::
CCDS46 ---------------------------------AENAMRYINGTRLDDRIIRTDWDAGFK
                                                50        60       

              130       140       150      
pF1KE0 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
       ::::::::::::::::::::::::::::::::::::
CCDS46 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
        70        80        90       100   




156 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:32:26 2016 done: Wed Nov  2 20:32:26 2016
 Total Scan time:  1.340 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]