Result of FASTA (omim) for
pF1KE0603
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0603, 156 aa
1>>>pF1KE0603 156 - 156 aa - 156 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0581+/-0.000391; mu= 15.0855+/- 0.025
mean_var=144.4050+/-34.884, 0's: 0 Z-trim(114.7): 208 B-trim: 1313 in 1/51
Lambda= 0.106729
statistics sampled from 24382 (24653) to 24382 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.289), width: 16
Scan time: 5.010
The best scores are: opt bits E(85289)
NP_031388 (OMIM: 605133) nuclear cap-binding prote ( 156) 1053 173.1 1.6e-43
NP_001294965 (OMIM: 605133) nuclear cap-binding pr ( 138) 885 147.1 9.4e-36
XP_011510860 (OMIM: 605133) PREDICTED: nuclear cap ( 86) 605 103.7 6.9e-23
XP_011510858 (OMIM: 605133) PREDICTED: nuclear cap ( 86) 605 103.7 6.9e-23
XP_011510859 (OMIM: 605133) PREDICTED: nuclear cap ( 86) 605 103.7 6.9e-23
NP_001036005 (OMIM: 605133) nuclear cap-binding pr ( 103) 441 78.6 3.1e-15
NP_001287744 (OMIM: 602649) cold-inducible RNA-bin ( 168) 222 45.2 5.6e-05
XP_016881726 (OMIM: 602649) PREDICTED: cold-induci ( 168) 222 45.2 5.6e-05
XP_006722700 (OMIM: 602649) PREDICTED: cold-induci ( 172) 222 45.2 5.7e-05
NP_001271 (OMIM: 602649) cold-inducible RNA-bindin ( 172) 222 45.2 5.7e-05
XP_011525970 (OMIM: 602649) PREDICTED: cold-induci ( 202) 222 45.3 6.2e-05
NP_001287758 (OMIM: 602649) cold-inducible RNA-bin ( 297) 222 45.5 7.7e-05
XP_005247760 (OMIM: 602719) PREDICTED: transformer ( 188) 205 42.6 0.00037
NP_001230808 (OMIM: 602719) transformer-2 protein ( 188) 205 42.6 0.00037
XP_011511374 (OMIM: 602719) PREDICTED: transformer ( 188) 205 42.6 0.00037
XP_016862522 (OMIM: 602719) PREDICTED: transformer ( 188) 205 42.6 0.00037
NP_004584 (OMIM: 602719) transformer-2 protein hom ( 288) 206 43.1 0.00042
NP_114381 (OMIM: 603431) eukaryotic translation in ( 228) 193 40.9 0.0015
XP_011514859 (OMIM: 603431) PREDICTED: eukaryotic ( 230) 193 40.9 0.0015
NP_006734 (OMIM: 300027) RNA-binding protein 3 [Ho ( 157) 189 40.0 0.0018
NP_002130 (OMIM: 300199,300238) RNA-binding motif ( 391) 179 39.1 0.0088
>>NP_031388 (OMIM: 605133) nuclear cap-binding protein s (156 aa)
initn: 1053 init1: 1053 opt: 1053 Z-score: 902.1 bits: 173.1 E(85289): 1.6e-43
Smith-Waterman score: 1053; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KE0 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK
70 80 90 100 110 120
130 140 150
pF1KE0 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
::::::::::::::::::::::::::::::::::::
NP_031 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
130 140 150
>>NP_001294965 (OMIM: 605133) nuclear cap-binding protei (138 aa)
initn: 885 init1: 885 opt: 885 Z-score: 762.8 bits: 147.1 E(85289): 9.4e-36
Smith-Waterman score: 885; 98.5% identity (99.2% similar) in 132 aa overlap (25-156:7-138)
10 20 30 40 50 60
pF1KE0 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF
. ::::::::::::::::::::::::::::::::::
NP_001 MVLRKLYAGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF
10 20 30 40
70 80 90 100 110 120
pF1KE0 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK
50 60 70 80 90 100
130 140 150
pF1KE0 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
::::::::::::::::::::::::::::::::::::
NP_001 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
110 120 130
>>XP_011510860 (OMIM: 605133) PREDICTED: nuclear cap-bin (86 aa)
initn: 605 init1: 605 opt: 605 Z-score: 531.8 bits: 103.7 E(85289): 6.9e-23
Smith-Waterman score: 605; 100.0% identity (100.0% similar) in 86 aa overlap (71-156:1-86)
50 60 70 80 90 100
pF1KE0 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY
::::::::::::::::::::::::::::::
XP_011 MGLDKMKKTACGFCFVEYYSRADAENAMRY
10 20 30
110 120 130 140 150
pF1KE0 INGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
40 50 60 70 80
>>XP_011510858 (OMIM: 605133) PREDICTED: nuclear cap-bin (86 aa)
initn: 605 init1: 605 opt: 605 Z-score: 531.8 bits: 103.7 E(85289): 6.9e-23
Smith-Waterman score: 605; 100.0% identity (100.0% similar) in 86 aa overlap (71-156:1-86)
50 60 70 80 90 100
pF1KE0 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY
::::::::::::::::::::::::::::::
XP_011 MGLDKMKKTACGFCFVEYYSRADAENAMRY
10 20 30
110 120 130 140 150
pF1KE0 INGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
40 50 60 70 80
>>XP_011510859 (OMIM: 605133) PREDICTED: nuclear cap-bin (86 aa)
initn: 605 init1: 605 opt: 605 Z-score: 531.8 bits: 103.7 E(85289): 6.9e-23
Smith-Waterman score: 605; 100.0% identity (100.0% similar) in 86 aa overlap (71-156:1-86)
50 60 70 80 90 100
pF1KE0 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY
::::::::::::::::::::::::::::::
XP_011 MGLDKMKKTACGFCFVEYYSRADAENAMRY
10 20 30
110 120 130 140 150
pF1KE0 INGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
40 50 60 70 80
>>NP_001036005 (OMIM: 605133) nuclear cap-binding protei (103 aa)
initn: 441 init1: 441 opt: 441 Z-score: 394.6 bits: 78.6 E(85289): 3.1e-15
Smith-Waterman score: 573; 66.0% identity (66.0% similar) in 156 aa overlap (1-156:1-103)
10 20 30 40 50 60
pF1KE0 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF
::::::::::::::::::::::::::::::::::::::: :
NP_001 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKS-----------------Y---
10 20 30 40
70 80 90 100 110 120
pF1KE0 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK
:::::::::::::::::::::::::::
NP_001 ---------------------------------AENAMRYINGTRLDDRIIRTDWDAGFK
50 60
130 140 150
pF1KE0 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
::::::::::::::::::::::::::::::::::::
NP_001 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
70 80 90 100
>>NP_001287744 (OMIM: 602649) cold-inducible RNA-binding (168 aa)
initn: 210 init1: 210 opt: 222 Z-score: 210.3 bits: 45.2 E(85289): 5.6e-05
Smith-Waterman score: 222; 37.4% identity (66.4% similar) in 107 aa overlap (42-147:8-113)
20 30 40 50 60 70
pF1KE0 DSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIM
:.::.::: :.:... ..::: :.:.....
NP_001 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVV
10 20 30
80 90 100 110 120 130
pF1KE0 GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYG-RGRS
:. . . :: :: . . ::..:: .:: .: : ::.: . ...:. : :: :
NP_001 VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGS
40 50 60 70 80 90
140 150
pF1KE0 GGQVRDEYRQDYDAGRGGYGKLAQNQ
.: : .: :::
NP_001 AGG-RGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSS
100 110 120 130 140 150
>>XP_016881726 (OMIM: 602649) PREDICTED: cold-inducible (168 aa)
initn: 210 init1: 210 opt: 222 Z-score: 210.3 bits: 45.2 E(85289): 5.6e-05
Smith-Waterman score: 222; 37.4% identity (66.4% similar) in 107 aa overlap (42-147:8-113)
20 30 40 50 60 70
pF1KE0 DSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIM
:.::.::: :.:... ..::: :.:.....
XP_016 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVV
10 20 30
80 90 100 110 120 130
pF1KE0 GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYG-RGRS
:. . . :: :: . . ::..:: .:: .: : ::.: . ...:. : :: :
XP_016 VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGS
40 50 60 70 80 90
140 150
pF1KE0 GGQVRDEYRQDYDAGRGGYGKLAQNQ
.: : .: :::
XP_016 AGG-RGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSS
100 110 120 130 140 150
>>XP_006722700 (OMIM: 602649) PREDICTED: cold-inducible (172 aa)
initn: 210 init1: 210 opt: 222 Z-score: 210.2 bits: 45.2 E(85289): 5.7e-05
Smith-Waterman score: 222; 37.4% identity (66.4% similar) in 107 aa overlap (42-147:8-113)
20 30 40 50 60 70
pF1KE0 DSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIM
:.::.::: :.:... ..::: :.:.....
XP_006 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVV
10 20 30
80 90 100 110 120 130
pF1KE0 GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYG-RGRS
:. . . :: :: . . ::..:: .:: .: : ::.: . ...:. : :: :
XP_006 VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGS
40 50 60 70 80 90
140 150
pF1KE0 GGQVRDEYRQDYDAGRGGYGKLAQNQ
.: : .: :::
XP_006 AGG-RGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSS
100 110 120 130 140 150
>>NP_001271 (OMIM: 602649) cold-inducible RNA-binding pr (172 aa)
initn: 210 init1: 210 opt: 222 Z-score: 210.2 bits: 45.2 E(85289): 5.7e-05
Smith-Waterman score: 222; 37.4% identity (66.4% similar) in 107 aa overlap (42-147:8-113)
20 30 40 50 60 70
pF1KE0 DSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIM
:.::.::: :.:... ..::: :.:.....
NP_001 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVV
10 20 30
80 90 100 110 120 130
pF1KE0 GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYG-RGRS
:. . . :: :: . . ::..:: .:: .: : ::.: . ...:. : :: :
NP_001 VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGS
40 50 60 70 80 90
140 150
pF1KE0 GGQVRDEYRQDYDAGRGGYGKLAQNQ
.: : .: :::
NP_001 AGG-RGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSS
100 110 120 130 140 150
156 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:32:26 2016 done: Wed Nov 2 20:32:27 2016
Total Scan time: 5.010 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]