FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0604, 359 aa
  1>>>pF1KE0604 359 - 359 aa - 359 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2927+/-0.000914; mu= 7.8750+/- 0.054
 mean_var=162.0750+/-34.544, 0's: 0 Z-trim(111.1): 90  B-trim: 283 in 1/49
 Lambda= 0.100743
 statistics sampled from 12040 (12133) to 12040 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.373), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS5400.1 SKAP2 gene_id:8935|Hs108|chr7           ( 359) 2452 368.2 5.9e-102
CCDS32674.1 SKAP1 gene_id:8631|Hs108|chr17         ( 359)  995 156.5 3.3e-38


>>CCDS5400.1 SKAP2 gene_id:8935|Hs108|chr7                (359 aa)
 initn: 2452 init1: 2452 opt: 2452  Z-score: 1943.8  bits: 368.2 E(32554): 5.9e-102
Smith-Waterman score: 2452; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)

               10        20        30        40        50        60
pF1KE0 MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRESLIKKIKDVKSIYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRESLIKKIKDVKSIYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QEFQDKGDAEDGEEYDDPFAGPPDTISLASERYDKDDEAPSDGAQFPPIAAQDLPFVLKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QEFQDKGDAEDGEEYDDPFAGPPDTISLASERYDKDDEAPSDGAQFPPIAAQDLPFVLKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYSVRMNNTLRKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYSVRMNNTLRKD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLKFVLQDMESDIIPEDYDERGELYDDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLKFVLQDMESDIIPEDYDERGELYDDV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 DHPLPISNPLTSSQPIDDEIYEELPEEEEDSAPVKVEEQRKMSQDSVHHTSGDKSTDYAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DHPLPISNPLTSSQPIDDEIYEELPEEEEDSAPVKVEEQRKMSQDSVHHTSGDKSTDYAN
              250       260       270       280       290       300

              310       320       330       340       350         
pF1KE0 FYQGLWDCTGAFSDELSFKRGDVIYILSKEYNRYGWWVGEMKGAIGLVPKAYIMEMYDI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FYQGLWDCTGAFSDELSFKRGDVIYILSKEYNRYGWWVGEMKGAIGLVPKAYIMEMYDI
              310       320       330       340       350         

>>CCDS32674.1 SKAP1 gene_id:8631|Hs108|chr17              (359 aa)
 initn: 1001 init1: 505 opt: 995  Z-score: 799.4  bits: 156.5 E(32554): 3.3e-38
Smith-Waterman score: 995; 44.6% identity (69.8% similar) in 361 aa overlap (13-359:6-356)

               10        20        30        40        50        60
pF1KE0 MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRESLIKKIKDVKSIYL
                   :::::: :: :.: :.:. :..::::  :...:. ... ....:. : 
CCDS32        MQAAALPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYY
                      10        20        30        40        50   

               70        80        90          100       110       
pF1KE0 QEFQDKGDAEDGEEYDDPFAGPPDTISLASER---YDKDDEAPSDGAQFPPIAAQDLPFV
        .:: .:     .  ::  .:    .::.:.     : .::.  : ..    .::.:  :
CCDS32 WDFQPQGGDIGQDSSDDNHSGTLG-LSLTSDAPFLSDYQDEGMEDIVK----GAQELDNV
            60        70         80        90       100            

       120       130       140       150       160       170       
pF1KE0 LKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYSVRMNNTL
       .: :::::. :::::.: :::::::..:. .::::...:.:: :: : : ::.:::   :
CCDS32 IKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHL
      110       120       130       140       150       160        

       180       190       200       210       220           230   
pF1KE0 RKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLKFVLQDMESDIIP----EDYDER
       :.:.::. :::... :.: :.:::.:: .:..::.:..:.:.:. :  ::    :. .:.
CCDS32 RRDSKKESCFELTSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEK
      170       180       190       200       210       220        

           240       250             260        270       280      
pF1KE0 GELYDDVDHPLPISNPLTSSQ------PIDDEIYEELPE-EEEDSAPVKVEEQRKMSQDS
        : :::.:    ...:  .::      : .  : :   : ::::   :  .:.. . .: 
CCDS32 EETYDDID---GFDSPSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEED-
      230          240       250       260       270       280     

        290       300       310       320       330       340      
pF1KE0 VHHTSGDKSTDYANFYQGLWDCTGAFSDELSFKRGDVIYILSKEYNRYGWWVGEMKGAIG
        .  .  :..:::..::::::: :   :::::.:::.: ::::::: :::::::... .:
CCDS32 -ESGTRRKGVDYASYYQGLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVG
           290       300       310       320       330       340   

        350            
pF1KE0 LVPKAYIMEMYDI   
       .::: :.   ...   
CCDS32 IVPKEYLTTAFEVEER
           350         




359 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:17:29 2016 done: Sat Nov  5 04:17:29 2016
 Total Scan time:  2.670 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]