FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0606, 453 aa
  1>>>pF1KE0606 453 - 453 aa - 453 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4776+/-0.00112; mu= 16.6445+/- 0.067
 mean_var=220.4589+/-91.376, 0's: 0 Z-trim(104.7): 180  B-trim: 1054 in 2/47
 Lambda= 0.086379
 statistics sampled from 7693 (8058) to 7693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.248), width:  16
 Scan time:  2.890

The best scores are:                                      opt bits E(32554)
CCDS2170.1 GPR39 gene_id:2863|Hs108|chr2           ( 453) 2983 386.0 4.3e-107


>>CCDS2170.1 GPR39 gene_id:2863|Hs108|chr2                (453 aa)
 initn: 2983 init1: 2983 opt: 2983  Z-score: 2036.2  bits: 386.0 E(32554): 4.3e-107
Smith-Waterman score: 2983; 100.0% identity (100.0% similar) in 453 aa overlap (1-453:1-453)

               10        20        30        40        50        60
pF1KE0 MASPSLPGSDCSQIIDHSHVPEFEVATWIKITLILVYLIIFVMGLLGNSATIRVTQVLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MASPSLPGSDCSQIIDHSHVPEFEVATWIKITLILVYLIIFVMGLLGNSATIRVTQVLQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KGYLQKEVTDHMVSLACSDILVFLIGMPMEFYSIIWNPLTTSSYTLSCKLHTFLFEACSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 KGYLQKEVTDHMVSLACSDILVFLIGMPMEFYSIIWNPLTTSSYTLSCKLHTFLFEACSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ATLLHVLTLSFERYIAICHPFRYKAVSGPCQVKLLIGFVWVTSALVALPLLFAMGTEYPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 ATLLHVLTLSFERYIAICHPFRYKAVSGPCQVKLLIGFVWVTSALVALPLLFAMGTEYPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VNVPSHRGLTCNRSSTRHHEQPETSNMSICTNLSSRWTVFQSSIFGAFVVYLVVLLSVAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 VNVPSHRGLTCNRSSTRHHEQPETSNMSICTNLSSRWTVFQSSIFGAFVVYLVVLLSVAF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 MCWNMMQVLMKSQKGSLAGGTRPPQLRKSESEESRTARRQTIIFLRLIVVTLAVCWMPNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MCWNMMQVLMKSQKGSLAGGTRPPQLRKSESEESRTARRQTIIFLRLIVVTLAVCWMPNQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 IRRIMAAAKPKHDWTRSYFRAYMILLPFSETFFYLSSVINPLLYTVSSQQFRRVFVQVLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 IRRIMAAAKPKHDWTRSYFRAYMILLPFSETFFYLSSVINPLLYTVSSQQFRRVFVQVLC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 CRLSLQHANHEKRLRVHAHSTTDSARFVQRPLLFASRRQSSARRTEKIFLSTFQSEAEPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 CRLSLQHANHEKRLRVHAHSTTDSARFVQRPLLFASRRQSSARRTEKIFLSTFQSEAEPQ
              370       380       390       400       410       420

              430       440       450   
pF1KE0 SKSQSLSLESLEPNSGAKPANSAAENGFQEHEV
       :::::::::::::::::::::::::::::::::
CCDS21 SKSQSLSLESLEPNSGAKPANSAAENGFQEHEV
              430       440       450   




453 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:11:16 2016 done: Sat Nov  5 18:11:16 2016
 Total Scan time:  2.890 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]