Result of FASTA (omim) for
pF1KE0611
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0611, 172 aa
1>>>pF1KE0611 172 - 172 aa - 172 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9545+/-0.000505; mu= 13.2647+/- 0.032
mean_var=321.6845+/-72.875, 0's: 0 Z-trim(117.4): 303 B-trim: 1817 in 1/50
Lambda= 0.071509
statistics sampled from 29056 (29430) to 29056 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.345), width: 16
Scan time: 5.510
The best scores are: opt bits E(85289)
NP_001271 (OMIM: 602649) cold-inducible RNA-bindin ( 172) 1159 132.3 3.9e-31
XP_006722700 (OMIM: 602649) PREDICTED: cold-induci ( 172) 1159 132.3 3.9e-31
NP_001287758 (OMIM: 602649) cold-inducible RNA-bin ( 297) 1133 130.0 3.1e-30
NP_001287744 (OMIM: 602649) cold-inducible RNA-bin ( 168) 1126 128.8 4.1e-30
XP_016881726 (OMIM: 602649) PREDICTED: cold-induci ( 168) 1126 128.8 4.1e-30
XP_011525970 (OMIM: 602649) PREDICTED: cold-induci ( 202) 1126 129.0 4.4e-30
NP_006734 (OMIM: 300027) RNA-binding protein 3 [Ho ( 157) 526 66.9 1.7e-11
NP_002130 (OMIM: 300199,300238) RNA-binding motif ( 391) 412 55.9 8.7e-08
NP_055284 (OMIM: 605444) RNA-binding motif protein ( 392) 374 52.0 1.3e-06
XP_011529740 (OMIM: 400006,415000) PREDICTED: RNA- ( 385) 355 50.0 5.1e-06
XP_011529739 (OMIM: 400006,415000) PREDICTED: RNA- ( 422) 355 50.1 5.3e-06
NP_001307873 (OMIM: 400006,415000) RNA-binding mot ( 459) 355 50.1 5.5e-06
NP_005049 (OMIM: 400006,415000) RNA-binding motif ( 496) 355 50.2 5.7e-06
XP_011511374 (OMIM: 602719) PREDICTED: transformer ( 188) 347 48.6 6.6e-06
NP_001230808 (OMIM: 602719) transformer-2 protein ( 188) 347 48.6 6.6e-06
XP_005247760 (OMIM: 602719) PREDICTED: transformer ( 188) 347 48.6 6.6e-06
XP_016862522 (OMIM: 602719) PREDICTED: transformer ( 188) 347 48.6 6.6e-06
NP_004584 (OMIM: 602719) transformer-2 protein hom ( 288) 347 48.9 8e-06
NP_006796 (OMIM: 609409) heterogeneous nuclear rib ( 305) 344 48.7 1e-05
NP_001269688 (OMIM: 602718) transformer-2 protein ( 180) 331 46.9 2e-05
XP_005249782 (OMIM: 602718) PREDICTED: transformer ( 181) 328 46.6 2.5e-05
XP_016867578 (OMIM: 602718) PREDICTED: transformer ( 181) 328 46.6 2.5e-05
NP_001269687 (OMIM: 602718) transformer-2 protein ( 181) 328 46.6 2.5e-05
NP_001269686 (OMIM: 602718) transformer-2 protein ( 181) 328 46.6 2.5e-05
XP_016867579 (OMIM: 602718) PREDICTED: transformer ( 181) 328 46.6 2.5e-05
NP_037425 (OMIM: 602718) transformer-2 protein hom ( 282) 328 46.9 3.1e-05
NP_005372 (OMIM: 164035) nucleolin [Homo sapiens] ( 710) 325 47.4 5.6e-05
XP_016880431 (OMIM: 600813) PREDICTED: serine/argi ( 221) 291 42.9 0.00039
NP_001182356 (OMIM: 600813) serine/arginine-rich s ( 221) 291 42.9 0.00039
NP_003007 (OMIM: 600813) serine/arginine-rich spli ( 221) 291 42.9 0.00039
NP_001158275 (OMIM: 300199,300238) RNA-binding mot ( 196) 285 42.2 0.00057
NP_115285 (OMIM: 603269) serine/arginine-rich spli ( 282) 281 42.1 0.00088
XP_016872631 (OMIM: 603269) PREDICTED: serine/argi ( 282) 281 42.1 0.00088
NP_001287865 (OMIM: 605221) serine/arginine-rich s ( 172) 252 38.7 0.0057
NP_001177935 (OMIM: 605221) serine/arginine-rich s ( 173) 252 38.7 0.0057
NP_001287866 (OMIM: 605221) serine/arginine-rich s ( 217) 250 38.7 0.0073
NP_001177934 (OMIM: 605221) serine/arginine-rich s ( 261) 250 38.8 0.0079
NP_473357 (OMIM: 605221) serine/arginine-rich spli ( 262) 250 38.8 0.0079
NP_001177936 (OMIM: 605221) serine/arginine-rich s ( 182) 247 38.2 0.0083
NP_006616 (OMIM: 605221) serine/arginine-rich spli ( 183) 247 38.2 0.0084
>>NP_001271 (OMIM: 602649) cold-inducible RNA-binding pr (172 aa)
initn: 1159 init1: 1159 opt: 1159 Z-score: 680.0 bits: 132.3 E(85289): 3.9e-31
Smith-Waterman score: 1159; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)
10 20 30 40 50 60
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
130 140 150 160 170
>>XP_006722700 (OMIM: 602649) PREDICTED: cold-inducible (172 aa)
initn: 1159 init1: 1159 opt: 1159 Z-score: 680.0 bits: 132.3 E(85289): 3.9e-31
Smith-Waterman score: 1159; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)
10 20 30 40 50 60
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
130 140 150 160 170
>>NP_001287758 (OMIM: 602649) cold-inducible RNA-binding (297 aa)
initn: 1126 init1: 1126 opt: 1133 Z-score: 663.7 bits: 130.0 E(85289): 3.1e-30
Smith-Waterman score: 1133; 97.7% identity (99.4% similar) in 173 aa overlap (1-172:1-173)
10 20 30 40 50 60
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYA-THNE
:::::::::::::::::::::::::::::::::::::::::::::::. .:.:
NP_001 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYGKSHSEGATLLWP
130 140 150 160 170 180
NP_001 AVGARFTLVPSPSTLGWTLRPCHCACPEEAHLSSQSHFYRRTQKPNETDQKGKGERGPAG
190 200 210 220 230 240
>>NP_001287744 (OMIM: 602649) cold-inducible RNA-binding (168 aa)
initn: 1126 init1: 1126 opt: 1126 Z-score: 661.7 bits: 128.8 E(85289): 4.1e-30
Smith-Waterman score: 1126; 100.0% identity (100.0% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYG
130 140 150 160
>>XP_016881726 (OMIM: 602649) PREDICTED: cold-inducible (168 aa)
initn: 1126 init1: 1126 opt: 1126 Z-score: 661.7 bits: 128.8 E(85289): 4.1e-30
Smith-Waterman score: 1126; 100.0% identity (100.0% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYG
130 140 150 160
>>XP_011525970 (OMIM: 602649) PREDICTED: cold-inducible (202 aa)
initn: 1126 init1: 1126 opt: 1126 Z-score: 661.1 bits: 129.0 E(85289): 4.4e-30
Smith-Waterman score: 1126; 100.0% identity (100.0% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYEAGQRAEARGIPG
130 140 150 160 170 180
XP_011 RPQTASRLASSAVASRVLSILC
190 200
>>NP_006734 (OMIM: 300027) RNA-binding protein 3 [Homo s (157 aa)
initn: 669 init1: 466 opt: 526 Z-score: 327.4 bits: 66.9 E(85289): 1.7e-11
Smith-Waterman score: 653; 64.9% identity (83.0% similar) in 171 aa overlap (1-166:1-157)
10 20 30 40 50 60
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
:.:.:::::::::.:.:.::.::. ::..: ::::::::::::::::::::.:: : . :
NP_006 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
. :: ::::.:.::::::::.::::. :: ::: :: :..::::..::::::
NP_006 SVAMRAMNGESLDGRQIRVDHAGKSA----RGTRGG-----GF--GAHGRGRSYSRGGGD
70 80 90 100
130 140 150 160 170
pF1KE0 RGYGGNRF-ESRSGGYG-G---SRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
.:::..:. .:: :::: : :::: ..:.: ::: :: :::.:::.::.
NP_006 QGYGSGRYYDSRPGGYGYGYGRSRDY-NGRNQ-GGY-DRYSGGNYRDNYDN
110 120 130 140 150
>>NP_002130 (OMIM: 300199,300238) RNA-binding motif prot (391 aa)
initn: 451 init1: 368 opt: 412 Z-score: 260.8 bits: 55.9 E(85289): 8.7e-08
Smith-Waterman score: 412; 48.2% identity (66.5% similar) in 170 aa overlap (2-166:4-168)
10 20 30 40 50
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID
:. ::::.:::. .:::..:: ::.:::.: ::...:::::..::::.:::::.
NP_002 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 DAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAG--GRGFFRGGRGRGRGFSR
::::: :::::.::. :.:.:: : : : :: .:: :: :: ::: :
NP_002 DAKDAARDMNGKSLDGKAIKVEQATKPS--FESGRRGPPPPPRSRGPPRGLRG-GRGGS-
70 80 90 100 110
120 130 140 150 160 170
pF1KE0 GGGDRGYGGNRFESRSGGYGGSRDYYSSRSQ---SGGYSDRSSGGSYRDSYDSYATHNE
:: :: . . .:::. . .. :::. . : ::.: . : :
NP_002 -GGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSS
120 130 140 150 160 170
NP_002 GMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYA
180 190 200 210 220 230
>>NP_055284 (OMIM: 605444) RNA-binding motif protein, X- (392 aa)
initn: 395 init1: 322 opt: 374 Z-score: 239.6 bits: 52.0 E(85289): 1.3e-06
Smith-Waterman score: 374; 47.0% identity (66.9% similar) in 151 aa overlap (2-146:4-144)
10 20 30 40 50
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID
:. ::::.:::...:.:..:: :.:::.: ::...:::::..::::.:::::.
NP_055 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 DAKDAMMAMNGKSVDGRQIRVDQAGKSS-DNRSRGYRGGSAGGRG-FFRGGRGRG----R
::: : :::::.::. :.: :: : . .. :: . :: :.:: :: : :
NP_055 DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 GFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
. :::: : .::: .. : ::.
NP_055 SPSRGGPDD----------DGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPA
130 140 150 160 170
NP_055 RSSGGGMRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRG
180 190 200 210 220 230
>>XP_011529740 (OMIM: 400006,415000) PREDICTED: RNA-bind (385 aa)
initn: 299 init1: 168 opt: 355 Z-score: 229.1 bits: 50.0 E(85289): 5.1e-06
Smith-Waterman score: 355; 44.7% identity (67.6% similar) in 170 aa overlap (2-166:4-169)
10 20 30 40 50
pF1KE0 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID
:. ::::.:::. .:::. :. ::.:.: ::::...::: :..::::.:.::::
XP_011 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 DAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRG-RGFSRG
:::.: :::::. :. :.:.:: : : .: : : :..:. .: :. :: :::
XP_011 DAKNAAKDMNGKSLHGKAIKVEQAKKPS-FQSGGRRRPPASSRNRSPSGSLRSARG-SRG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 GGDRGY-GGNRFESRSGGYGGSRDYYSSRSQ---SGGYSDRSSGGSYRDSYDSYATHNE
: ::. ... . .::: . . ::. . : :.::.: . : :
XP_011 G-TRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNS
120 130 140 150 160 170
XP_011 WMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSR
180 190 200 210 220 230
172 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:25:36 2016 done: Wed Nov 2 20:25:37 2016
Total Scan time: 5.510 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]