FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0615, 174 aa
  1>>>pF1KE0615 174 - 174 aa - 174 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8934+/-0.000675; mu= 10.6169+/- 0.041
 mean_var=108.1678+/-23.075, 0's: 0 Z-trim(112.8): 137  B-trim: 826 in 1/52
 Lambda= 0.123318
 statistics sampled from 13318 (13501) to 13318 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.415), width:  16
 Scan time:  1.920

The best scores are:                                      opt bits E(32554)
CCDS72872.1 RBM8A gene_id:9939|Hs108|chr1          ( 174) 1194 222.1 1.4e-58


>>CCDS72872.1 RBM8A gene_id:9939|Hs108|chr1               (174 aa)
 initn: 1194 init1: 1194 opt: 1194  Z-score: 1165.5  bits: 222.1 E(32554): 1.4e-58
Smith-Waterman score: 1194; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174)

               10        20        30        40        50        60
pF1KE0 MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE
               70        80        90       100       110       120

              130       140       150       160       170    
pF1KE0 YETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSPDRRRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 YETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSPDRRRR
              130       140       150       160       170    




174 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:09:51 2016 done: Wed Nov  2 20:09:51 2016
 Total Scan time:  1.920 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]