Result of FASTA (ccds) for
pF1KE0616
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0616, 316 aa
1>>>pF1KE0616 316 - 316 aa - 316 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4122+/-0.000872; mu= 5.9890+/- 0.052
mean_var=138.9924+/-28.411, 0's: 0 Z-trim(111.5): 104 B-trim: 206 in 2/49
Lambda= 0.108787
statistics sampled from 12331 (12457) to 12331 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.383), width: 16
Scan time: 2.090
The best scores are: opt bits E(32554)
CCDS47172.1 PDLIM3 gene_id:27295|Hs108|chr4 ( 316) 2182 353.6 1.1e-97
CCDS3844.1 PDLIM3 gene_id:27295|Hs108|chr4 ( 364) 1095 183.1 2.9e-46
CCDS75218.1 PDLIM3 gene_id:27295|Hs108|chr4 ( 197) 1020 171.1 6.1e-43
CCDS75219.1 PDLIM3 gene_id:27295|Hs108|chr4 ( 276) 1013 170.1 1.7e-42
CCDS7441.1 PDLIM1 gene_id:9124|Hs108|chr10 ( 329) 610 106.9 2.2e-23
CCDS4152.1 PDLIM4 gene_id:8572|Hs108|chr5 ( 330) 547 97.1 2.1e-20
CCDS47261.1 PDLIM4 gene_id:8572|Hs108|chr5 ( 246) 513 91.6 6.6e-19
CCDS4423.1 PDLIM7 gene_id:9260|Hs108|chr5 ( 423) 439 80.2 3.2e-15
CCDS44450.1 LDB3 gene_id:11155|Hs108|chr10 ( 330) 355 66.9 2.4e-11
CCDS53549.1 LDB3 gene_id:11155|Hs108|chr10 ( 398) 353 66.7 3.5e-11
CCDS7377.1 LDB3 gene_id:11155|Hs108|chr10 ( 727) 355 67.1 4.6e-11
CCDS53550.1 LDB3 gene_id:11155|Hs108|chr10 ( 732) 353 66.8 5.8e-11
>>CCDS47172.1 PDLIM3 gene_id:27295|Hs108|chr4 (316 aa)
initn: 2182 init1: 2182 opt: 2182 Z-score: 1867.0 bits: 353.6 E(32554): 1.1e-97
Smith-Waterman score: 2182; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)
10 20 30 40 50 60
pF1KE0 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNEPTASVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNEPTASVP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 PESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARAR
250 260 270 280 290 300
310
pF1KE0 TKPPEGYDTVTLYPKA
::::::::::::::::
CCDS47 TKPPEGYDTVTLYPKA
310
>>CCDS3844.1 PDLIM3 gene_id:27295|Hs108|chr4 (364 aa)
initn: 1827 init1: 1010 opt: 1095 Z-score: 944.1 bits: 183.1 E(32554): 2.9e-46
Smith-Waterman score: 1659; 74.4% identity (81.3% similar) in 348 aa overlap (17-316:17-364)
10 20 30 40 50 60
pF1KE0 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN
::::::::::::::::::::::::::::::::::::::::::::::::::. . . ::
CCDS38 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN
70 80 90 100 110 120
130
pF1KE0 RRAQPFV---------AAANID--------------------DKR---------------
: .::: . ..:: : .
CCDS38 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE0 ---QVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSP-QNEPTASVPPESDVYRMLHDN
..: :..:.:. ::: .::...:.::. . .: ..:::::::::::::::::::
CCDS38 PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVPPESDVYRMLHDN
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE0 RNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 RNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSG
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE0 IVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 IVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTL
310 320 330 340 350 360
pF1KE0 YPKA
::::
CCDS38 YPKA
>>CCDS75218.1 PDLIM3 gene_id:27295|Hs108|chr4 (197 aa)
initn: 1249 init1: 1010 opt: 1020 Z-score: 884.4 bits: 171.1 E(32554): 6.1e-43
Smith-Waterman score: 1030; 58.5% identity (60.1% similar) in 316 aa overlap (1-316:1-197)
10 20 30 40 50 60
pF1KE0 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
:::::::::::::::::::::::::::::::
CCDS75 MPQTVILPGPAPWGFRLSGGIDFNQPLVITR-----------------------------
10 20 30
70 80 90 100 110 120
pF1KE0 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN
::. : ::
CCDS75 ----------------------------------DGNYFEHK----------------HN
40
130 140 150 160 170 180
pF1KE0 RRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNEPTASVP
: .::: ::. ..:::::::
CCDS75 IRPKPFV---------------------------------------IPGR-SSEPTASVP
50 60
190 200 210 220 230 240
pF1KE0 PESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGA
70 80 90 100 110 120
250 260 270 280 290 300
pF1KE0 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARAR
130 140 150 160 170 180
310
pF1KE0 TKPPEGYDTVTLYPKA
::::::::::::::::
CCDS75 TKPPEGYDTVTLYPKA
190
>>CCDS75219.1 PDLIM3 gene_id:27295|Hs108|chr4 (276 aa)
initn: 1788 init1: 1010 opt: 1013 Z-score: 876.3 bits: 170.1 E(32554): 1.7e-42
Smith-Waterman score: 1716; 82.6% identity (84.8% similar) in 316 aa overlap (1-316:1-276)
10 20 30 40 50 60
pF1KE0 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN
::::::::::::::::::::::::::::::::::::::::::::::::::. . . ::
CCDS75 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNEPTASVP
: .::: ::. ..:::::::
CCDS75 IRPKPFV---------------------------------------IPGR-SSEPTASVP
130 140
190 200 210 220 230 240
pF1KE0 PESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGA
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE0 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARAR
210 220 230 240 250 260
310
pF1KE0 TKPPEGYDTVTLYPKA
::::::::::::::::
CCDS75 TKPPEGYDTVTLYPKA
270
>>CCDS7441.1 PDLIM1 gene_id:9124|Hs108|chr10 (329 aa)
initn: 1182 init1: 610 opt: 610 Z-score: 533.4 bits: 106.9 E(32554): 2.2e-23
Smith-Waterman score: 1175; 53.4% identity (78.4% similar) in 328 aa overlap (3-315:4-329)
10 20 30 40 50
pF1KE0 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTES
: . : ::.:::::: :: ::.:::.:.:.::::::: :::: :::: :::: .: .
CCDS74 MTTQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 MTHADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAH
::: .::.:::. . .: : . :.: ..::: :.:.:: ::.:.:: ::::: ::.::
CCDS74 MTHLEAQNRIKGCTDNLTLTVARSEHKVWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAH
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 NRRAQPFVAAANIDDKRQVVSASYNSPIGLYST---SNIQDALHGQL--RGLIPSS-PQN
:: :.::.:. . .:.. .::.: ::::. ::...::... :. .: : .
CCDS74 NRSAMPFTASPASSTTARVITNQYNNPAGLYSSENISNFNNALESKTAASGVEANSRPLD
130 140 150 160 170 180
180 190 200 210 220
pF1KE0 --EPTAS--VPPESDVYRMLHDNR--NEPTQPRQSGSFRVLQGMVDD---GSDDRPAGTR
.: .: . ::.::.::.... ::: :.:: :: ::: .... :. ..:.: :
CCDS74 HAQPPSSLVIDKESEVYKMLQEKQELNEP--PKQSTSFLVLQEILESEEKGDPNKPSGFR
190 200 210 220 230
230 240 250 260 270 280
pF1KE0 SVRAPVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGY
::.:::::: .. :.::..:.:::::.::::. :: ::..:::::.::.::. ::::::.
CCDS74 SVKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGH
240 250 260 270 280 290
290 300 310
pF1KE0 FFIEGELYCETHARARTKPPEGYDTVTLYPKA
::.: ..::: ::: :. :::::..::..::
CCDS74 FFVEDQIYCEKHARERVTPPEGYEVVTVFPK
300 310 320
>>CCDS4152.1 PDLIM4 gene_id:8572|Hs108|chr5 (330 aa)
initn: 816 init1: 383 opt: 547 Z-score: 479.9 bits: 97.1 E(32554): 2.1e-20
Smith-Waterman score: 934; 44.6% identity (72.3% similar) in 332 aa overlap (1-316:1-325)
10 20 30 40 50 60
pF1KE0 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
::..: : ::.:::::: :: ::. ::.:.:. ::::: : :::::.: ::.: .:: :
CCDS41 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN
:: .::.:::. .: :...: : . : :.. .:.::. .:... : :. .: . .
CCDS41 THLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQDGSP---TTS
70 80 90 100 110
130 140 150 160 170
pF1KE0 RRAQPFVAAANIDDKRQVVSASYNSP--IGLYSTSNIQDALHGQLRGL-IPSSPQNEPTA
:: : .... .: : ... :..: . . ... . .: .:. : . :. .:.
CCDS41 RR--PSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPAR
120 130 140 150 160 170
180 190 200 210 220
pF1KE0 SVPPESD--------VYRMLHDNRNEPT--QPRQSGSFRVLQGMVD--DGSD-DRPAGTR
..: : :::::.. ::. .:.:::::: ::::.. .:.: :.: :
CCDS41 GLPRSRDCRVDLGSEVYRMLREP-AEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPR
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 SVRAPVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGY
... ..:. . .: : .: : .:: ::::..:::::: :::::.:.::.:::::.::
CCDS41 NLKPTASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGY
240 250 260 270 280 290
290 300 310
pF1KE0 FFIEGELYCETHARARTKPPEGYDTVTLYPKA
::.. .::::.::.::.:::::::.:..::.:
CCDS41 FFLDERLYCESHAKARVKPPEGYDVVAVYPNAKVELV
300 310 320 330
>>CCDS47261.1 PDLIM4 gene_id:8572|Hs108|chr5 (246 aa)
initn: 424 init1: 343 opt: 513 Z-score: 452.9 bits: 91.6 E(32554): 6.6e-19
Smith-Waterman score: 513; 37.9% identity (66.3% similar) in 243 aa overlap (1-230:1-236)
10 20 30 40 50 60
pF1KE0 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
::..: : ::.:::::: :: ::. ::.:.:. ::::: : :::::.: ::.: .:: :
CCDS47 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN
:: .::.:::. .: :...: : . : :.. .:.::. .:... : :. .: .
CCDS47 THLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQDGSPTTS---
70 80 90 100 110
130 140 150 160 170
pF1KE0 RRAQPFVAAANIDDKRQVVSASYNSP--IGLYSTSNIQDALHGQLRGL-IPSSPQNEPTA
:: : .... .: : ... :..: . . ... . .: .:. : . :. .:.
CCDS47 RR--PSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPAR
120 130 140 150 160 170
180 190 200 210 220
pF1KE0 SVPPESD--------VYRMLHDNRNEPT--QPRQSGSFRVLQGMVDDGSDDRPAGTRSVR
..: : :::::.. ::. .:.:::::: ::::.. : :.. ...
CCDS47 GLPRSRDCRVDLGSEVYRMLREP-AEPVAAEPKQSGSFRYLQGMLEAGEGGAPSSRHGTS
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 APVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFI
. .
CCDS47 STIPSASCAVTAA
240
>>CCDS4423.1 PDLIM7 gene_id:9260|Hs108|chr5 (423 aa)
initn: 468 init1: 314 opt: 439 Z-score: 386.8 bits: 80.2 E(32554): 3.2e-15
Smith-Waterman score: 446; 30.0% identity (56.1% similar) in 310 aa overlap (5-303:6-305)
10 20 30 40 50
pF1KE0 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTES
:.: :::::::::.:: ::: :: :.:.:::.::: :.. :: .:.::: .. :
CCDS44 MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 MTHADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPF--------KINLESEPQE
.:: .::..:.: ...: : ..:.. .:: . .:. : : . ..
CCDS44 LTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKVQTPDKQPLRPLVPDASKQRLMENTED
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 FKP-IGTAHNRRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSS
..: ::...: : :.. . . . . . : ..:.. . . :.
CCDS44 WRPRPGTGQSR---SFRILAHLTGTEFMQDPDEEH---LKKSSQVPRTEAPAPASSTPQE
130 140 150 160 170
180 190 200 210 220
pF1KE0 PQNEPTASVPPESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRS--VRA
: ::: : . . : : .... :: . .. : .:. :.:
CCDS44 PWPGPTAPSPTSRPPW-AVDPAFAERYAPDKTST--VLTRHSQPATPT-PLQSRTSIVQA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 PVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIE
. : ::... . :.: .: . : : . : . ::: :::..:. :.. :.: .
CCDS44 AAGGVPGGGSNNGKTPVCHQCHKVIRGRYLVALGHAYHPEEFVCSQCGKVLEEGGFFEEK
240 250 260 270 280 290
290 300 310
pF1KE0 GELYCETHARARTKPPEGYDTVTLYPKA
: ..: .: :
CCDS44 GAIFCPPCYDVRYAPSCAKCKKKITGEIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEG
300 310 320 330 340 350
>>CCDS44450.1 LDB3 gene_id:11155|Hs108|chr10 (330 aa)
initn: 392 init1: 317 opt: 355 Z-score: 317.1 bits: 66.9 E(32554): 2.4e-11
Smith-Waterman score: 369; 31.0% identity (59.9% similar) in 274 aa overlap (1-263:1-255)
10 20 30 40 50 60
pF1KE0 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
: .: : ::.::::::.:: :::.::.:.::::::::: ..: ::...:::: .:..:
CCDS44 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 THADAQDRIKAAAHQLCLKIDRGETHL----WSPQVSEDGKAHPFKIN--LESEPQEFKP
:: .::..::.:...: : ..... . .: :. . : . . :... . :
CCDS44 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPALDTNGSLVAP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 IGTAHNRRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNE
. . . ::.: .. . . : . : ... : .. : .. .: :. :.
CCDS44 -SPSPEARASP--GTPGTPELRPTFSPAFSRPSAFSSLAEASD----------PGPPRAS
130 140 150 160
180 190 200 210 220 230
pF1KE0 PTASVPPESDVYRMLHDNRNEP--TQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTK
:.. ::. : : . : .:::: .. : . .. . :.:. ..
CCDS44 LRAKTSPEG--ARDLLGPKALPGSSQPRQYNNPIGLYS-AETLREMAQMYQMSLRGKASG
170 180 190 200 210 220
240 250 260 270 280
pF1KE0 VHGGSGGAQRMPLCD---KCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEG
: : ::. .:. : .: . ::.:...:
CCDS44 V-GLPGGS--LPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQM
230 240 250 260 270 280
290 300 310
pF1KE0 ELYCETHARARTKPPEGYDTVTLYPKA
CCDS44 TGTEFMQDPDEEALRRSRERFETERNSPRFAKLRNWHHGLSAQILNVKS
290 300 310 320 330
>>CCDS53549.1 LDB3 gene_id:11155|Hs108|chr10 (398 aa)
initn: 427 init1: 317 opt: 353 Z-score: 314.2 bits: 66.7 E(32554): 3.5e-11
Smith-Waterman score: 359; 34.0% identity (62.7% similar) in 209 aa overlap (1-201:1-194)
10 20 30 40 50 60
pF1KE0 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
: .: : ::.::::::.:: :::.::.:.::::::::: ..: ::...:::: .:..:
CCDS53 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 THADAQDRIKAAAHQLCLKIDRGETHL----WSPQVSEDGKAHPFKIN--LESEPQEFKP
:: .::..::.:...: : ..... . .: :. . : . . :... . :
CCDS53 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPALDTNGSLVAP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 IGTAHNRRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNE
. . . ::.: .. . . : . : ... : .. : .. .: :. :.
CCDS53 -SPSPEARASP--GTPGTPELRPTFSPAFSRPSAFSSLAEASD----------PGPPRAS
130 140 150 160
180 190 200 210 220 230
pF1KE0 PTASVPPESDVYRMLHDNRNEP--TQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTK
:.. ::. : : . : .::::
CCDS53 LRAKTSPEGA--RDLLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGV
170 180 190 200 210 220
316 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:06:52 2016 done: Wed Nov 2 20:06:53 2016
Total Scan time: 2.090 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]