FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0618, 366 aa
  1>>>pF1KE0618 366 - 366 aa - 366 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5303+/-0.00084; mu= 15.3525+/- 0.051
 mean_var=75.2354+/-15.511, 0's: 0 Z-trim(107.3): 56  B-trim: 531 in 1/51
 Lambda= 0.147864
 statistics sampled from 9444 (9481) to 9444 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.291), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS41406.1 TDRD10 gene_id:126668|Hs108|chr1       ( 366) 2454 532.9 1.7e-151
CCDS30878.2 TDRD10 gene_id:126668|Hs108|chr1       ( 351) 2293 498.5 3.5e-141


>>CCDS41406.1 TDRD10 gene_id:126668|Hs108|chr1            (366 aa)
 initn: 2454 init1: 2454 opt: 2454  Z-score: 2833.5  bits: 532.9 E(32554): 1.7e-151
Smith-Waterman score: 2454; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)

               10        20        30        40        50        60
pF1KE0 MSWNISHPQLSDKLFGKNGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSWNISHPQLSDKLFGKNGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DVHKIQNGCKCFAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DVHKIQNGCKCFAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 APLVLEKASGEGFGKTAAIIQLAPKAPVDLCETEKLRAAFFAVPLEMRGSFLVLLLRECF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 APLVLEKASGEGFGKTAAIIQLAPKAPVDLCETEKLRAAFFAVPLEMRGSFLVLLLRECF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 RDLSWLALIHSVRGEAGLLVTSIVPKTPFFWAMHVTEALHQNMQALFSTLAQAEEQQPYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RDLSWLALIHSVRGEAGLLVTSIVPKTPFFWAMHVTEALHQNMQALFSTLAQAEEQQPYL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EGSTVMRGTRCLAEYHLGDYGHAWNRCWVLDRVDTWAVVMFIDFGQLATIPVQSLRSLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EGSTVMRGTRCLAEYHLGDYGHAWNRCWVLDRVDTWAVVMFIDFGQLATIPVQSLRSLDS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 DDFWTIPPLTQPFMLEKDILSSYEVVHRILKGKITGALNSAVTAPASNLAVVPPLLPLGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DDFWTIPPLTQPFMLEKDILSSYEVVHRILKGKITGALNSAVTAPASNLAVVPPLLPLGC
              310       320       330       340       350       360

             
pF1KE0 LQQAAA
       ::::::
CCDS41 LQQAAA
             

>>CCDS30878.2 TDRD10 gene_id:126668|Hs108|chr1            (351 aa)
 initn: 2314 init1: 2293 opt: 2293  Z-score: 2648.1  bits: 498.5 E(32554): 3.5e-141
Smith-Waterman score: 2293; 99.7% identity (100.0% similar) in 342 aa overlap (1-342:1-342)

               10        20        30        40        50        60
pF1KE0 MSWNISHPQLSDKLFGKNGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSWNISHPQLSDKLFGKNGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DVHKIQNGCKCFAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DVHKIQNGCKCFAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 APLVLEKASGEGFGKTAAIIQLAPKAPVDLCETEKLRAAFFAVPLEMRGSFLVLLLRECF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 APLVLEKASGEGFGKTAAIIQLAPKAPVDLCETEKLRAAFFAVPLEMRGSFLVLLLRECF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 RDLSWLALIHSVRGEAGLLVTSIVPKTPFFWAMHVTEALHQNMQALFSTLAQAEEQQPYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RDLSWLALIHSVRGEAGLLVTSIVPKTPFFWAMHVTEALHQNMQALFSTLAQAEEQQPYL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EGSTVMRGTRCLAEYHLGDYGHAWNRCWVLDRVDTWAVVMFIDFGQLATIPVQSLRSLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EGSTVMRGTRCLAEYHLGDYGHAWNRCWVLDRVDTWAVVMFIDFGQLATIPVQSLRSLDS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 DDFWTIPPLTQPFMLEKDILSSYEVVHRILKGKITGALNSAVTAPASNLAVVPPLLPLGC
       :::::::::::::::::::::::::::::::::::::::::.                  
CCDS30 DDFWTIPPLTQPFMLEKDILSSYEVVHRILKGKITGALNSALHILKFEESK         
              310       320       330       340       350          

             
pF1KE0 LQQAAA




366 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:00:06 2016 done: Wed Nov  2 20:00:07 2016
 Total Scan time:  2.450 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]