Result of FASTA (ccds) for
pF1KE0631
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0631, 200 aa
1>>>pF1KE0631 200 - 200 aa - 200 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6071+/-0.00104; mu= 11.9303+/- 0.062
mean_var=116.1637+/-25.127, 0's: 0 Z-trim(106.0): 159 B-trim: 442 in 2/48
Lambda= 0.118998
statistics sampled from 8519 (8736) to 8519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.268), width: 16
Scan time: 1.610
The best scores are: opt bits E(32554)
CCDS43972.1 PABPC1L2B gene_id:645974|Hs108|chrX ( 200) 1331 239.4 1.1e-63
CCDS35334.1 PABPC1L2A gene_id:340529|Hs108|chrX ( 200) 1331 239.4 1.1e-63
CCDS6289.1 PABPC1 gene_id:26986|Hs108|chr8 ( 636) 1076 196.2 3.7e-50
CCDS44114.1 PABPC4 gene_id:8761|Hs108|chr1 ( 631) 1044 190.7 1.7e-48
CCDS438.1 PABPC4 gene_id:8761|Hs108|chr1 ( 644) 1044 190.7 1.7e-48
CCDS44115.1 PABPC4 gene_id:8761|Hs108|chr1 ( 660) 1044 190.7 1.7e-48
CCDS42878.1 PABPC1L gene_id:80336|Hs108|chr20 ( 614) 985 180.5 1.8e-45
CCDS9311.1 PABPC3 gene_id:5042|Hs108|chr13 ( 631) 965 177.1 2e-44
CCDS14460.1 PABPC5 gene_id:140886|Hs108|chrX ( 382) 782 145.4 4.1e-35
CCDS72900.1 SF3B4 gene_id:10262|Hs108|chr1 ( 424) 359 72.9 3.2e-13
>>CCDS43972.1 PABPC1L2B gene_id:645974|Hs108|chrX (200 aa)
initn: 1331 init1: 1331 opt: 1331 Z-score: 1256.6 bits: 239.4 E(32554): 1.1e-63
Smith-Waterman score: 1331; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ
130 140 150 160 170 180
190 200
pF1KE0 STSADVKDFEEDTDEEATLR
::::::::::::::::::::
CCDS43 STSADVKDFEEDTDEEATLR
190 200
>>CCDS35334.1 PABPC1L2A gene_id:340529|Hs108|chrX (200 aa)
initn: 1331 init1: 1331 opt: 1331 Z-score: 1256.6 bits: 239.4 E(32554): 1.1e-63
Smith-Waterman score: 1331; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ
130 140 150 160 170 180
190 200
pF1KE0 STSADVKDFEEDTDEEATLR
::::::::::::::::::::
CCDS35 STSADVKDFEEDTDEEATLR
190 200
>>CCDS6289.1 PABPC1 gene_id:26986|Hs108|chr8 (636 aa)
initn: 1201 init1: 1076 opt: 1076 Z-score: 1013.9 bits: 196.2 E(32554): 3.7e-50
Smith-Waterman score: 1076; 80.1% identity (93.4% similar) in 196 aa overlap (1-196:10-205)
10 20 30 40 50
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ
:::::::::::.::::::::::::::::::::.::: ::::::::::::.:
CCDS62 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFS
::.::.:::.:.:::::::.::::::::::::::::::::.::::: :.:::::::. ::
CCDS62 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE
::::::::::.:::.: ::::::::. ::.:::::. ::::.:: ::.:::::::.::::
CCDS62 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
130 140 150 160 170 180
180 190 200
pF1KE0 AERGAWARQSTSADVKDFEEDTDEEATLR
:: :: :.. :.. .:.: :: :.:
CCDS62 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
190 200 210 220 230 240
>>CCDS44114.1 PABPC4 gene_id:8761|Hs108|chr1 (631 aa)
initn: 1149 init1: 1044 opt: 1044 Z-score: 984.3 bits: 190.7 E(32554): 1.7e-48
Smith-Waterman score: 1044; 76.6% identity (93.4% similar) in 197 aa overlap (1-197:10-206)
10 20 30 40 50
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ
:::::::::: .:::::::::::::::.::::.::: ::::::::::::.:
CCDS44 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFS
::.::.:::.:.:::::::.:.:::::::::::::::::::::::: :.:::::::. ::
CCDS44 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE
::::::::::.:::.: :::.::::. ::.:..::. ::::.:: ::.:::::::.::::
CCDS44 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
130 140 150 160 170 180
180 190 200
pF1KE0 AERGAWARQSTSADVKDFEEDTDEEATLR
:: :: :.. :.. .:.: :..:.:.
CCDS44 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK
190 200 210 220 230 240
>>CCDS438.1 PABPC4 gene_id:8761|Hs108|chr1 (644 aa)
initn: 1149 init1: 1044 opt: 1044 Z-score: 984.2 bits: 190.7 E(32554): 1.7e-48
Smith-Waterman score: 1044; 76.6% identity (93.4% similar) in 197 aa overlap (1-197:10-206)
10 20 30 40 50
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ
:::::::::: .:::::::::::::::.::::.::: ::::::::::::.:
CCDS43 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFS
::.::.:::.:.:::::::.:.:::::::::::::::::::::::: :.:::::::. ::
CCDS43 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE
::::::::::.:::.: :::.::::. ::.:..::. ::::.:: ::.:::::::.::::
CCDS43 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
130 140 150 160 170 180
180 190 200
pF1KE0 AERGAWARQSTSADVKDFEEDTDEEATLR
:: :: :.. :.. .:.: :..:.:.
CCDS43 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK
190 200 210 220 230 240
>>CCDS44115.1 PABPC4 gene_id:8761|Hs108|chr1 (660 aa)
initn: 1149 init1: 1044 opt: 1044 Z-score: 984.1 bits: 190.7 E(32554): 1.7e-48
Smith-Waterman score: 1044; 76.6% identity (93.4% similar) in 197 aa overlap (1-197:10-206)
10 20 30 40 50
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ
:::::::::: .:::::::::::::::.::::.::: ::::::::::::.:
CCDS44 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFS
::.::.:::.:.:::::::.:.:::::::::::::::::::::::: :.:::::::. ::
CCDS44 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE
::::::::::.:::.: :::.::::. ::.:..::. ::::.:: ::.:::::::.::::
CCDS44 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
130 140 150 160 170 180
180 190 200
pF1KE0 AERGAWARQSTSADVKDFEEDTDEEATLR
:: :: :.. :.. .:.: :..:.:.
CCDS44 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK
190 200 210 220 230 240
>>CCDS42878.1 PABPC1L gene_id:80336|Hs108|chr20 (614 aa)
initn: 1087 init1: 982 opt: 985 Z-score: 929.7 bits: 180.5 E(32554): 1.8e-45
Smith-Waterman score: 985; 71.4% identity (91.8% similar) in 196 aa overlap (1-196:10-205)
10 20 30 40 50
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ
.::::::::::.::::::::::::::::::::.::: :::::::::.:.:
CCDS42 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFS
::.::.:::.:.::...::.:.:::::::::.::::::::.::::: .:::::::. ::
CCDS42 QPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE
.:::::::::::::.: .:.:::::. .:.:..::..::::.:: ::.:::.:::..:::
CCDS42 TFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERE
130 140 150 160 170 180
180 190 200
pF1KE0 AERGAWARQSTSADVKDFEEDTDEEATLR
:: :: : . :. ::.. :.::.
CCDS42 AELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEK
190 200 210 220 230 240
>>CCDS9311.1 PABPC3 gene_id:5042|Hs108|chr13 (631 aa)
initn: 1081 init1: 965 opt: 965 Z-score: 911.0 bits: 177.1 E(32554): 2e-44
Smith-Waterman score: 965; 73.3% identity (89.2% similar) in 195 aa overlap (2-196:11-205)
10 20 30 40 50
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ
::::::::::.:::::::::::::::::::::::: :: : .:::::.:
CCDS93 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFS
. ::..::.:.:::::::.::::::::::::::::::::.:.::: :.:.:::::. :
CCDS93 HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 AFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE
::::::::.:.:::.: ::::::::. .:.::::: ::::.:: ::.:::.:::.::::
CCDS93 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKERE
130 140 150 160 170 180
180 190 200
pF1KE0 AERGAWARQSTSADVKDFEEDTDEEATLR
:: :: :.. .. .:.: :: :.:
CCDS93 AELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
190 200 210 220 230 240
>>CCDS14460.1 PABPC5 gene_id:140886|Hs108|chrX (382 aa)
initn: 761 init1: 761 opt: 782 Z-score: 743.8 bits: 145.4 E(32554): 4.1e-35
Smith-Waterman score: 782; 59.7% identity (81.6% similar) in 196 aa overlap (2-196:18-213)
10 20 30 40
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLG
:.:::::: :.::: :::.:: ::::. ::::: .:: ::
CCDS14 MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 YAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNK
:.:::.. :.::. ::.:.:::.:.:.: :.:::: : ::::::::.::::: :.:::.
CCDS14 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 ALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRF
::. .::::::::::::.::..: :::..:::.. .:.::: :::. :: :...::::
CCDS14 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
130 140 150 160 170 180
170 180 190 200
pF1KE0 KSHKEREAERGAWARQS-TSADVKDFEEDTDEEATLR
: .:: :: . : . :.. ::.. .: :.:
CCDS14 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
190 200 210 220 230 240
CCDS14 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
250 260 270 280 290 300
>>CCDS72900.1 SF3B4 gene_id:10262|Hs108|chr1 (424 aa)
initn: 318 init1: 148 opt: 359 Z-score: 350.8 bits: 72.9 E(32554): 3.2e-13
Smith-Waterman score: 359; 35.6% identity (68.1% similar) in 188 aa overlap (2-184:13-197)
10 20 30 40
pF1KE0 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVN
:..::: : .:.: .:.: : :::... .. .:..: . ::..:.
CCDS72 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 YQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYN
. . :: :.. .:. . :.:.:. .. . .. :: :.:: :: ::.: ::.
CCDS72 FLSEEDADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYD
70 80 90 100 110
110 120 130 140 150 160
pF1KE0 IFSAFGNILSC-KVACD-EKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK
::::: ::. :. : . : :::.:..: . .... ::..:::..: : : :. .
CCDS72 TFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YA
120 130 140 150 160 170
170 180 190 200
pF1KE0 SHKEREAER-GAWARQSTSADVKDFEEDTDEEATLR
.:. ..:: :. :.. .:
CCDS72 FKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGM
180 190 200 210 220 230
200 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:33:35 2016 done: Wed Nov 2 19:33:35 2016
Total Scan time: 1.610 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]