Result of FASTA (ccds) for
pF1KE0661
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0661, 236 aa
1>>>pF1KE0661 236 - 236 aa - 236 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7122+/-0.00126; mu= 4.6612+/- 0.075
mean_var=211.2387+/-45.658, 0's: 0 Z-trim(108.9): 129 B-trim: 629 in 1/49
Lambda= 0.088244
statistics sampled from 10388 (10524) to 10388 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.323), width: 16
Scan time: 1.320
The best scores are: opt bits E(32554)
CCDS47378.1 RBM24 gene_id:221662|Hs108|chr6 ( 236) 1550 209.6 1.5e-54
CCDS4538.1 RBM24 gene_id:221662|Hs108|chr6 ( 191) 1184 162.9 1.3e-40
CCDS47379.1 RBM24 gene_id:221662|Hs108|chr6 ( 178) 1174 161.6 3.1e-40
CCDS46617.1 RBM38 gene_id:55544|Hs108|chr20 ( 239) 871 123.2 1.5e-28
CCDS46618.1 RBM38 gene_id:55544|Hs108|chr20 ( 121) 599 88.2 2.6e-18
>>CCDS47378.1 RBM24 gene_id:221662|Hs108|chr6 (236 aa)
initn: 1550 init1: 1550 opt: 1550 Z-score: 1093.1 bits: 209.6 E(32554): 1.5e-54
Smith-Waterman score: 1550; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236)
10 20 30 40 50 60
pF1KE0 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 YVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAA
130 140 150 160 170 180
190 200 210 220 230
pF1KE0 SPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ
190 200 210 220 230
>>CCDS4538.1 RBM24 gene_id:221662|Hs108|chr6 (191 aa)
initn: 1184 init1: 1184 opt: 1184 Z-score: 842.4 bits: 162.9 E(32554): 1.3e-40
Smith-Waterman score: 1184; 100.0% identity (100.0% similar) in 180 aa overlap (57-236:12-191)
30 40 50 60 70 80
pF1KE0 LRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA
::::::::::::::::::::::::::::::
CCDS45 MYVCLCVSVAKVTMADRAAAERACKDPNPIIDGRKANVNLA
10 20 30 40
90 100 110 120 130 140
pF1KE0 YLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAAST
50 60 70 80 90 100
150 160 170 180 190 200
pF1KE0 TPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQPITAAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQPITAAAP
110 120 130 140 150 160
210 220 230
pF1KE0 GTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ
::::::::::::::::::::::::::::::
CCDS45 GTAAAAAAAAAAAAAFGQYQPQQLQTDRMQ
170 180 190
>>CCDS47379.1 RBM24 gene_id:221662|Hs108|chr6 (178 aa)
initn: 1174 init1: 1174 opt: 1174 Z-score: 835.9 bits: 161.6 E(32554): 3.1e-40
Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 178 aa overlap (59-236:1-178)
30 40 50 60 70 80
pF1KE0 KYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL
::::::::::::::::::::::::::::::
CCDS47 MADRAAAERACKDPNPIIDGRKANVNLAYL
10 20 30
90 100 110 120 130 140
pF1KE0 GAKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GAKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTP
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 YIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQPITAAAPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQPITAAAPGT
100 110 120 130 140 150
210 220 230
pF1KE0 AAAAAAAAAAAAAFGQYQPQQLQTDRMQ
::::::::::::::::::::::::::::
CCDS47 AAAAAAAAAAAAAFGQYQPQQLQTDRMQ
160 170
>>CCDS46617.1 RBM38 gene_id:55544|Hs108|chr20 (239 aa)
initn: 950 init1: 790 opt: 871 Z-score: 625.8 bits: 123.2 E(32554): 1.5e-28
Smith-Waterman score: 984; 68.1% identity (79.4% similar) in 238 aa overlap (1-236:24-239)
10 20 30
pF1KE0 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEI
:: .:::::.:::::::::::::::::::::: ::.:
CCDS46 MLLQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: .:
CCDS46 EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQT
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 GFAFGVQQLHPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGA--
:::.:::::::.:::: .:. ::.:: :.:::.:::: . :. . .: :::.:: :
CCDS46 GFAIGVQQLHPTLIQRTYGLTPHYIYPPAIVQPSVVIP-AAPVPSLSS--PYIEYTPASP
130 140 150 160 170
160 170 180 190 200 210
pF1KE0 AYAQYSAAAAAAAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAA
::::: :. :::::::::::.:. .. .: :: : ..::::
CCDS46 AYAQYPPAT--------YDQYPYAASPATAASFVGYSYPAAVPQALSAAAP---------
180 190 200 210 220
220 230
pF1KE0 AAAAAAFGQYQPQQLQTDRMQ
:...: ::: ::: ::::
CCDS46 --AGTTFVQYQAPQLQPDRMQ
230
>>CCDS46618.1 RBM38 gene_id:55544|Hs108|chr20 (121 aa)
initn: 599 init1: 599 opt: 599 Z-score: 442.3 bits: 88.2 E(32554): 2.6e-18
Smith-Waterman score: 599; 91.8% identity (95.9% similar) in 98 aa overlap (1-98:24-121)
10 20 30
pF1KE0 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEI
:: .:::::.:::::::::::::::::::::: ::.:
CCDS46 MLLQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: .:
CCDS46 EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQT
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 GFAFGVQQLHPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAY
:
CCDS46 G
236 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:33:33 2016 done: Wed Nov 2 18:33:33 2016
Total Scan time: 1.320 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]