Result of FASTA (ccds) for
pF1KE0673
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0673, 261 aa
1>>>pF1KE0673 261 - 261 aa - 261 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0541+/-0.000996; mu= 4.4330+/- 0.060
mean_var=257.6015+/-52.367, 0's: 0 Z-trim(112.4): 125 B-trim: 116 in 1/51
Lambda= 0.079910
statistics sampled from 13023 (13151) to 13023 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.404), width: 16
Scan time: 2.540
The best scores are: opt bits E(32554)
CCDS47459.1 SRSF12 gene_id:135295|Hs108|chr6 ( 261) 1771 216.7 1.3e-56
CCDS30630.1 SRSF10 gene_id:10772|Hs108|chr1 ( 262) 834 108.7 4.3e-24
CCDS53282.1 SRSF10 gene_id:10772|Hs108|chr1 ( 261) 828 108.0 7e-24
CCDS30629.1 SRSF10 gene_id:10772|Hs108|chr1 ( 183) 734 97.0 1e-20
CCDS53283.1 SRSF10 gene_id:10772|Hs108|chr1 ( 173) 729 96.4 1.5e-20
CCDS72728.1 SRSF10 gene_id:10772|Hs108|chr1 ( 172) 723 95.7 2.3e-20
CCDS53281.1 SRSF10 gene_id:10772|Hs108|chr1 ( 182) 722 95.6 2.6e-20
CCDS53280.1 SRSF10 gene_id:10772|Hs108|chr1 ( 165) 710 94.1 6.4e-20
>>CCDS47459.1 SRSF12 gene_id:135295|Hs108|chr6 (261 aa)
initn: 1771 init1: 1771 opt: 1771 Z-score: 1129.8 bits: 216.7 E(32554): 1.3e-56
Smith-Waterman score: 1771; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)
10 20 30 40 50 60
pF1KE0 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQT
190 200 210 220 230 240
250 260
pF1KE0 AKHSHFRSHSRSRSYRHKNSW
:::::::::::::::::::::
CCDS47 AKHSHFRSHSRSRSYRHKNSW
250 260
>>CCDS30630.1 SRSF10 gene_id:10772|Hs108|chr1 (262 aa)
initn: 994 init1: 641 opt: 834 Z-score: 546.0 bits: 108.7 E(32554): 4.3e-24
Smith-Waterman score: 834; 56.6% identity (74.0% similar) in 265 aa overlap (1-261:1-254)
10 20 30 40 50 60
pF1KE0 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED
:::: ::::::::.::::: :: :::::::::::::::::.:::::::::::::::::::
CCDS30 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPSDHRRSRSPSQRR
::::::::.::.:::.:::::::::::::::::.:::.:: :. : : : . ::
CCDS30 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSS--RYDDYDRYRR
70 80 90 100 110
120 130 140 150 160 170
pF1KE0 TRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGR
.:::: .:::: : . . . : ::: .:: . :::: : .: . : . .:.
CCDS30 SRSRS----YERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRS--HSDNDRFKHRNRSF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SRSKSLQK-RSKSIGKSQSSSPQKQTS-SGTKSRSHGRHSDSIARSPCKSPKGYTNSETK
::::: .. :::: :.. .. ... : : ::.:. .. .:: .. :: . : . :
CCDS30 SRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSK-TDS--KTHYKSGSRYEKESRK
180 190 200 210 220
240 250 260
pF1KE0 VQTAK-HSHFRSHSRSRSYRHKNSW
. . .:. ::.::::: .. ::
CCDS30 KEPPRSKSQSRSQSRSRSKSRSRSWTSPKSSGH
230 240 250 260
>>CCDS53282.1 SRSF10 gene_id:10772|Hs108|chr1 (261 aa)
initn: 678 init1: 678 opt: 828 Z-score: 542.3 bits: 108.0 E(32554): 7e-24
Smith-Waterman score: 828; 55.1% identity (71.5% similar) in 267 aa overlap (1-260:1-258)
10 20 30 40 50 60
pF1KE0 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED
:::: ::::::::.::::: :: :::::::::::::::::.:::::::::::::::::::
CCDS53 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPSDH------RRSR
::::::::.::.:::.:::::::::::::::::.:::.:: :. : : . ::::
CCDS53 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRN
: : .: :::: :. : ::: : .. : :.:.: . . .:. : .:.
CCDS53 SRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDRFKHRNRSFSRSK-----
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 FGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTN
: .:::::: : ... .::.: : .. . ::.. . : : .: .: :
CCDS53 --SNSRSRSKS-QPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKK-EP
180 190 200 210 220 230
240 250 260
pF1KE0 SETKVQTAKHSHFRSHSRSRSYRHKNSW
..: :. ..:. ::.:::::. .:
CCDS53 PRSKSQSRSQSRSRSKSRSRSWTSPKSSGH
240 250 260
>>CCDS30629.1 SRSF10 gene_id:10772|Hs108|chr1 (183 aa)
initn: 849 init1: 641 opt: 734 Z-score: 485.5 bits: 97.0 E(32554): 1e-20
Smith-Waterman score: 734; 65.2% identity (77.9% similar) in 181 aa overlap (1-180:1-175)
10 20 30 40 50 60
pF1KE0 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED
:::: ::::::::.::::: :: :::::::::::::::::.:::::::::::::::::::
CCDS30 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPSDHRRSRSPSQRR
::::::::.::.:::.:::::::::::::::::.:::.:: :. : : : . ::
CCDS30 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSS--RYDDYDRYRR
70 80 90 100 110
120 130 140 150 160 170
pF1KE0 TRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGR
.:::: .:::: : . . . : ::: .:: . :::: : .. : .....
CCDS30 SRSRS----YERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQ
:
CCDS30 SAYYTSRKI
180
>>CCDS53283.1 SRSF10 gene_id:10772|Hs108|chr1 (173 aa)
initn: 860 init1: 641 opt: 729 Z-score: 482.7 bits: 96.4 E(32554): 1.5e-20
Smith-Waterman score: 729; 68.2% identity (79.2% similar) in 173 aa overlap (1-165:1-173)
10 20 30 40 50 60
pF1KE0 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED
:::: ::::::::.::::: :: :::::::::::::::::.:::::::::::::::::::
CCDS53 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPSDH------RRSR
::::::::.::.:::.:::::::::::::::::.:::.:: :. : : . ::::
CCDS53 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SPSQRRTRSRSSSWGRNRRRSDSLKESRHR-RFSYSQSKSRSKSLPRRSTSARQSRTPRR
: : .: :::: :. : ::: : ..:: : :.:.: . : .. . :
CCDS53 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDSQVSKKKNER
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 NFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYT
>>CCDS72728.1 SRSF10 gene_id:10772|Hs108|chr1 (172 aa)
initn: 873 init1: 641 opt: 723 Z-score: 478.9 bits: 95.7 E(32554): 2.3e-20
Smith-Waterman score: 723; 67.4% identity (78.5% similar) in 172 aa overlap (1-165:1-172)
10 20 30 40 50 60
pF1KE0 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED
:::: ::::::::.::::: :: :::::::::::::::::.:::::::::::::::::::
CCDS72 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPSDH------RRSR
::::::::.::.:::.:::::::::::::::::.:::.:: :. : : . ::::
CCDS72 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRN
: : .: :::: :. : ::: : .. : :.:.: . : .. . :
CCDS72 SRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDSQVSKKKNER
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 FGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTN
>>CCDS53281.1 SRSF10 gene_id:10772|Hs108|chr1 (182 aa)
initn: 790 init1: 641 opt: 722 Z-score: 478.0 bits: 95.6 E(32554): 2.6e-20
Smith-Waterman score: 722; 64.6% identity (77.9% similar) in 181 aa overlap (1-180:1-174)
10 20 30 40 50 60
pF1KE0 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED
:::: ::::::::.::::: :: :::::::::::::::::.:::::::::::::::::::
CCDS53 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPSDHRRSRSPSQRR
::::::::.::.:::.:::::::::::::::::.:::.:: :. : : : . ::
CCDS53 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSS--RYDDYDRYRR
70 80 90 100 110
120 130 140 150 160 170
pF1KE0 TRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGR
.:::: .:::: : . . . : ::: ..: . :::: : .. : .....
CCDS53 SRSRS----YERRRSRSRSFDYNYRRSYSP-RNRPTGRPRRSRSHSDNDRPNCSWNTQYS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQ
:
CCDS53 SAYYTSRKI
180
>>CCDS53280.1 SRSF10 gene_id:10772|Hs108|chr1 (165 aa)
initn: 796 init1: 641 opt: 710 Z-score: 471.1 bits: 94.1 E(32554): 6.4e-20
Smith-Waterman score: 713; 69.9% identity (80.4% similar) in 163 aa overlap (1-153:1-163)
10 20 30 40 50 60
pF1KE0 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED
:::: ::::::::.::::: :: :::::::::::::::::.:::::::::::::::::::
CCDS53 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE-RHPCSPSDH------RRSR
::::::::.::.:::.:::::::::::::::::.:::.:: :. : : . ::::
CCDS53 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SPSQRRTRSRSSSWGRNRRRSDSLKE---SRHRRFSYSQSKSRSKSLPRRSTSARQSRTP
: : .: :::: :. : ::: : .. : . ..: . ::
CCDS53 SRSYERRRSRSRSFDYNYRRSYSPRKPNCSWNTQYSSAYYTSRKI
130 140 150 160
180 190 200 210 220 230
pF1KE0 RRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKG
261 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:21:29 2016 done: Sat Nov 5 18:21:30 2016
Total Scan time: 2.540 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]