FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0677, 263 aa
  1>>>pF1KE0677 263 - 263 aa - 263 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8597+/-0.000666; mu= 10.7452+/- 0.041
 mean_var=160.3211+/-33.081, 0's: 0 Z-trim(116.4): 178  B-trim: 40 in 1/51
 Lambda= 0.101293
 statistics sampled from 16835 (17038) to 16835 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.523), width:  16
 Scan time:  2.570

The best scores are:                                      opt bits E(32554)
CCDS44388.2 DRGX gene_id:644168|Hs108|chr10        ( 263) 1786 271.7 3.7e-73
CCDS31468.1 ALX4 gene_id:60529|Hs108|chr11         ( 411)  422 72.6 5.1e-13
CCDS14215.1 ARX gene_id:170302|Hs108|chrX          ( 562)  403 69.9 4.3e-12


>>CCDS44388.2 DRGX gene_id:644168|Hs108|chr10             (263 aa)
 initn: 1786 init1: 1786 opt: 1786  Z-score: 1426.9  bits: 271.7 E(32554): 3.7e-73
Smith-Waterman score: 1786; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KE0 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MFYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 SCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKP
              190       200       210       220       230       240

              250       260   
pF1KE0 APPDGSQEKTSPTKEQSEAEKSV
       :::::::::::::::::::::::
CCDS44 APPDGSQEKTSPTKEQSEAEKSV
              250       260   

>>CCDS31468.1 ALX4 gene_id:60529|Hs108|chr11              (411 aa)
 initn: 409 init1: 330 opt: 422  Z-score: 347.2  bits: 72.6 E(32554): 5.1e-13
Smith-Waterman score: 422; 42.2% identity (62.3% similar) in 199 aa overlap (32-220:213-407)

              10        20        30        40        50        60 
pF1KE0 FYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVF
                                     :.::::::::  ::: :: :: .::::::.
CCDS31 KEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVY
            190       200       210       220       230       240  

              70        80        90       100       110       120 
pF1KE0 TREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPP
       .::.:::. .::::::::::::::::::: :: .. :.  ..   :   :  .:  :   
CCDS31 AREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQ
            250       260       270       280       290       300  

             130       140       150             160           170 
pF1KE0 PGDQARSKKEALEAQQSLGRTVGPAGPFFPSCL------PGTLLNTAT----YAQALSHV
         . .   ...  : . .   : :  :  :.:.      ::.  ...:     . : :::
CCDS31 IQNPSWLGNNG--AASPVPACVVPCDPV-PACMSPHAHPPGSGASSVTDFLSVSGAGSHV
            310         320        330       340       350         

             180       190       200       210       220       230 
pF1KE0 ASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTS
       .. . : : .    .: ::.     :  . .:.:.:.:::::.::: :.           
CCDS31 GQTHMGSLFGAASLSP-GLNGYELNGEPDRKTSSIAALRMKAKEHSAAISWAT       
     360       370        380       390       400       410        

             240       250       260   
pF1KE0 SSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV

>>CCDS14215.1 ARX gene_id:170302|Hs108|chrX               (562 aa)
 initn: 420 init1: 348 opt: 403  Z-score: 330.5  bits: 69.9 E(32554): 4.3e-12
Smith-Waterman score: 456; 40.9% identity (61.1% similar) in 247 aa overlap (20-232:314-557)

                          10        20         30        40        
pF1KE0            MFYFHCPPQLEGTATFGNHSSG-DFDDGFLRRKQRRNRTTFTLQQLEAL
                                     :.: : ..:.:.::::: :::::  ::: :
CCDS14 TEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEEL
           290       300       310       320       330       340   

       50        60        70        80        90        100       
pF1KE0 EAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER-GASDQEPGAKEP--
       : .: .::::::::::::::...::::::::::::::::::: :. ::. . ::   :  
CCDS14 ERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGLPFPGP
           350       360       370       380       390       400   

         110        120       130       140       150           160
pF1KE0 MAEVTP-PPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFP--SCLP--GTLLN
       .. . :  :  . .  ::   : ..  :  :  . . .. :. :  :  . ::  :. :.
CCDS14 LSATHPLSPYLDASPFPPHHPALDS--AWTAAAAAAAAAFPSLPPPPGSASLPPSGAPLG
           410       420         430       440       450       460 

                170                180                     190     
pF1KE0 TATY--AQALSHVASLKGG---------PLCSCCV-------PDPM-------GLSFLPT
        .:.  : .. : : .. .         :: :  .       : :        :    :.
CCDS14 LSTFLGAAVFRHPAFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVEGAVASGALADPA
             470       480       490       500       510       520 

         200       210       220       230       240       250     
pF1KE0 YGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKPAPPDGSQEKTSPTKE
        .  . :..:.:.::.::.::. : : . :.::.::.                       
CCDS14 TAAADRRASSIAALRLKAKEHA-AQLTQLNILPGTSTGKEVC                  
             530       540        550       560                    

         260   
pF1KE0 QSEAEKSV




263 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:16:59 2016 done: Sat Nov  5 04:16:59 2016
 Total Scan time:  2.570 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]