FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0682, 389 aa
  1>>>pF1KE0682 389 - 389 aa - 389 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.2790+/-0.000931; mu= -10.1683+/- 0.056
 mean_var=323.5037+/-66.564, 0's: 0 Z-trim(115.2): 13  B-trim: 0 in 0/55
 Lambda= 0.071307
 statistics sampled from 15745 (15753) to 15745 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.484), width:  16
 Scan time:  3.440

The best scores are:                                      opt bits E(32554)
CCDS1159.1 SH2D2A gene_id:9047|Hs108|chr1          ( 389) 2739 295.0 7.8e-80
CCDS53380.1 SH2D2A gene_id:9047|Hs108|chr1         ( 371) 2584 279.0 4.7e-75
CCDS53381.1 SH2D2A gene_id:9047|Hs108|chr1         ( 399) 2044 223.5 2.7e-58


>>CCDS1159.1 SH2D2A gene_id:9047|Hs108|chr1               (389 aa)
 initn: 2739 init1: 2739 opt: 2739  Z-score: 1546.7  bits: 295.0 E(32554): 7.8e-80
Smith-Waterman score: 2739; 100.0% identity (100.0% similar) in 389 aa overlap (1-389:1-389)

               10        20        30        40        50        60
pF1KE0 MEFPLAQICPQGSHEAPIPTFSTFQITDMTRRSCQNLGYTAASPQAPEAASNTGNAERAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEFPLAQICPQGSHEAPIPTFSTFQITDMTRRSCQNLGYTAASPQAPEAASNTGNAERAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EVPGEGSLFLQAETRAWFQKTQAHWLLQHGAAPAWFHGFITRREAERLLEPKPQGCYLVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EVPGEGSLFLQAETRAWFQKTQAHWLLQHGAAPAWFHGFITRREAERLLEPKPQGCYLVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FSESAVTFVLTYRSRTCCRHFLLAQLRDGRHVVLGEDSAHARLQDLLLHYTAHPLSPYGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FSESAVTFVLTYRSRTCCRHFLLAQLRDGRHVVLGEDSAHARLQDLLLHYTAHPLSPYGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TLTEPLARQTPEPAGLSLRTEESNFGSKSQDPNPQYSPIIKQGQAPVPMQKEGAGEKEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TLTEPLARQTPEPAGLSLRTEESNFGSKSQDPNPQYSPIIKQGQAPVPMQKEGAGEKEPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QLLRPKPPIPAKPQLPPEVYTIPVPRHRPAPRPKPSNPIYNEPDEPIAFYAMGRGSPGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLLRPKPPIPAKPQLPPEVYTIPVPRHRPAPRPKPSNPIYNEPDEPIAFYAMGRGSPGEA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 PSNIYVEVEDEGLPATLGHPVLRKSWSRPVPGGQNTGGSQLHSENSVIGQGPPLPHQPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PSNIYVEVEDEGLPATLGHPVLRKSWSRPVPGGQNTGGSQLHSENSVIGQGPPLPHQPPP
              310       320       330       340       350       360

              370       380         
pF1KE0 AWRHTLPHNLSRQVLQDRGQAWLPLGPPQ
       :::::::::::::::::::::::::::::
CCDS11 AWRHTLPHNLSRQVLQDRGQAWLPLGPPQ
              370       380         

>>CCDS53380.1 SH2D2A gene_id:9047|Hs108|chr1              (371 aa)
 initn: 2584 init1: 2584 opt: 2584  Z-score: 1460.9  bits: 279.0 E(32554): 4.7e-75
Smith-Waterman score: 2584; 100.0% identity (100.0% similar) in 368 aa overlap (22-389:4-371)

               10        20        30        40        50        60
pF1KE0 MEFPLAQICPQGSHEAPIPTFSTFQITDMTRRSCQNLGYTAASPQAPEAASNTGNAERAE
                            :::::::::::::::::::::::::::::::::::::::
CCDS53                   MSPSTFQITDMTRRSCQNLGYTAASPQAPEAASNTGNAERAE
                                 10        20        30        40  

               70        80        90       100       110       120
pF1KE0 EVPGEGSLFLQAETRAWFQKTQAHWLLQHGAAPAWFHGFITRREAERLLEPKPQGCYLVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EVPGEGSLFLQAETRAWFQKTQAHWLLQHGAAPAWFHGFITRREAERLLEPKPQGCYLVR
             50        60        70        80        90       100  

              130       140       150       160       170       180
pF1KE0 FSESAVTFVLTYRSRTCCRHFLLAQLRDGRHVVLGEDSAHARLQDLLLHYTAHPLSPYGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FSESAVTFVLTYRSRTCCRHFLLAQLRDGRHVVLGEDSAHARLQDLLLHYTAHPLSPYGE
            110       120       130       140       150       160  

              190       200       210       220       230       240
pF1KE0 TLTEPLARQTPEPAGLSLRTEESNFGSKSQDPNPQYSPIIKQGQAPVPMQKEGAGEKEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TLTEPLARQTPEPAGLSLRTEESNFGSKSQDPNPQYSPIIKQGQAPVPMQKEGAGEKEPS
            170       180       190       200       210       220  

              250       260       270       280       290       300
pF1KE0 QLLRPKPPIPAKPQLPPEVYTIPVPRHRPAPRPKPSNPIYNEPDEPIAFYAMGRGSPGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QLLRPKPPIPAKPQLPPEVYTIPVPRHRPAPRPKPSNPIYNEPDEPIAFYAMGRGSPGEA
            230       240       250       260       270       280  

              310       320       330       340       350       360
pF1KE0 PSNIYVEVEDEGLPATLGHPVLRKSWSRPVPGGQNTGGSQLHSENSVIGQGPPLPHQPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PSNIYVEVEDEGLPATLGHPVLRKSWSRPVPGGQNTGGSQLHSENSVIGQGPPLPHQPPP
            290       300       310       320       330       340  

              370       380         
pF1KE0 AWRHTLPHNLSRQVLQDRGQAWLPLGPPQ
       :::::::::::::::::::::::::::::
CCDS53 AWRHTLPHNLSRQVLQDRGQAWLPLGPPQ
            350       360       370 

>>CCDS53381.1 SH2D2A gene_id:9047|Hs108|chr1              (399 aa)
 initn: 2037 init1: 2037 opt: 2044  Z-score: 1160.2  bits: 223.5 E(32554): 2.7e-58
Smith-Waterman score: 2709; 97.5% identity (97.5% similar) in 399 aa overlap (1-389:1-399)

               10        20        30        40        50        60
pF1KE0 MEFPLAQICPQGSHEAPIPTFSTFQITDMTRRSCQNLGYTAASPQAPEAASNTGNAERAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MEFPLAQICPQGSHEAPIPTFSTFQITDMTRRSCQNLGYTAASPQAPEAASNTGNAERAE
               10        20        30        40        50        60

               70        80        90       100                 110
pF1KE0 EVPGEGSLFLQAETRAWFQKTQAHWLLQHGAAPAWFHGFITRR----------EAERLLE
       :::::::::::::::::::::::::::::::::::::::::::          :::::::
CCDS53 EVPGEGSLFLQAETRAWFQKTQAHWLLQHGAAPAWFHGFITRRVRPPLSVTHREAERLLE
               70        80        90       100       110       120

              120       130       140       150       160       170
pF1KE0 PKPQGCYLVRFSESAVTFVLTYRSRTCCRHFLLAQLRDGRHVVLGEDSAHARLQDLLLHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PKPQGCYLVRFSESAVTFVLTYRSRTCCRHFLLAQLRDGRHVVLGEDSAHARLQDLLLHY
              130       140       150       160       170       180

              180       190       200       210       220       230
pF1KE0 TAHPLSPYGETLTEPLARQTPEPAGLSLRTEESNFGSKSQDPNPQYSPIIKQGQAPVPMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TAHPLSPYGETLTEPLARQTPEPAGLSLRTEESNFGSKSQDPNPQYSPIIKQGQAPVPMQ
              190       200       210       220       230       240

              240       250       260       270       280       290
pF1KE0 KEGAGEKEPSQLLRPKPPIPAKPQLPPEVYTIPVPRHRPAPRPKPSNPIYNEPDEPIAFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KEGAGEKEPSQLLRPKPPIPAKPQLPPEVYTIPVPRHRPAPRPKPSNPIYNEPDEPIAFY
              250       260       270       280       290       300

              300       310       320       330       340       350
pF1KE0 AMGRGSPGEAPSNIYVEVEDEGLPATLGHPVLRKSWSRPVPGGQNTGGSQLHSENSVIGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AMGRGSPGEAPSNIYVEVEDEGLPATLGHPVLRKSWSRPVPGGQNTGGSQLHSENSVIGQ
              310       320       330       340       350       360

              360       370       380         
pF1KE0 GPPLPHQPPPAWRHTLPHNLSRQVLQDRGQAWLPLGPPQ
       :::::::::::::::::::::::::::::::::::::::
CCDS53 GPPLPHQPPPAWRHTLPHNLSRQVLQDRGQAWLPLGPPQ
              370       380       390         




389 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:45:29 2016 done: Sat Nov  5 02:45:29 2016
 Total Scan time:  3.440 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]