FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0685, 280 aa
  1>>>pF1KE0685 280 - 280 aa - 280 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1492+/-0.000756; mu= 12.5375+/- 0.046
 mean_var=103.7299+/-20.184, 0's: 0 Z-trim(111.4): 15  B-trim: 0 in 0/52
 Lambda= 0.125928
 statistics sampled from 12358 (12365) to 12358 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.38), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS14036.1 RRP7A gene_id:27341|Hs108|chr22        ( 280) 1868 349.3 1.8e-96


>>CCDS14036.1 RRP7A gene_id:27341|Hs108|chr22             (280 aa)
 initn: 1868 init1: 1868 opt: 1868  Z-score: 1845.3  bits: 349.3 E(32554): 1.8e-96
Smith-Waterman score: 1868; 99.6% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KE0 MVARRRKCAARDPEDRIPSPLGYAAIPIKFSEKQQASHYLYVRAHGVRQGTKSTWPQKRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVARRRKCAARDPEDRIPSPLGYAAIPIKFSEKQQASHYLYVRAHGVRQGTKSTWPQKRT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LFVLNVPPYCTEESLSRLLSTCGLIQSVELQEKPDLAESPKESRSKFFHPKPVPGFQVAY
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS14 LFVLNVPPYCTEESLSRLLSTCGLVQSVELQEKPDLAESPKESRSKFFHPKPVPGFQVAY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VVFQKPSGVSAALALKGPLLVSTESHPVKSGIHKWISDYADSVPDPEALRVEVDTFMEAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VVFQKPSGVSAALALKGPLLVSTESHPVKSGIHKWISDYADSVPDPEALRVEVDTFMEAY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DQKIAEEEAKAKEEEGVPDEEGWVKVTRRGRRPVLPRTEAASLRVLERERRKRSRKELLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DQKIAEEEAKAKEEEGVPDEEGWVKVTRRGRRPVLPRTEAASLRVLERERRKRSRKELLN
              190       200       210       220       230       240

              250       260       270       280
pF1KE0 FYAWQHRESKMEHLAQLRKKFEEDKQRIELLRAQRKFRPY
       ::::::::::::::::::::::::::::::::::::::::
CCDS14 FYAWQHRESKMEHLAQLRKKFEEDKQRIELLRAQRKFRPY
              250       260       270       280




280 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:22:03 2016 done: Sat Nov  5 18:22:04 2016
 Total Scan time:  2.580 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]