Result of FASTA (ccds) for
pF1KE0695
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0695, 284 aa
1>>>pF1KE0695 284 - 284 aa - 284 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5342+/-0.00079; mu= 13.7238+/- 0.047
mean_var=63.5442+/-12.824, 0's: 0 Z-trim(107.3): 17 B-trim: 0 in 0/50
Lambda= 0.160893
statistics sampled from 9462 (9473) to 9462 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.291), width: 16
Scan time: 2.260
The best scores are: opt bits E(32554)
CCDS11301.1 RDM1 gene_id:201299|Hs108|chr17 ( 284) 1886 446.2 1.2e-125
CCDS54109.1 RDM1 gene_id:201299|Hs108|chr17 ( 261) 1681 398.6 2.4e-111
CCDS42299.1 RDM1 gene_id:201299|Hs108|chr17 ( 236) 1458 346.9 8.3e-96
CCDS54111.1 RDM1 gene_id:201299|Hs108|chr17 ( 251) 1261 301.2 5.1e-82
CCDS59281.1 RDM1 gene_id:201299|Hs108|chr17 ( 228) 1056 253.6 9.9e-68
CCDS54110.1 RDM1 gene_id:201299|Hs108|chr17 ( 166) 882 213.1 1.1e-55
CCDS82109.1 RDM1 gene_id:201299|Hs108|chr17 ( 139) 881 212.9 1.1e-55
CCDS54108.1 RDM1 gene_id:201299|Hs108|chr17 ( 116) 676 165.2 1.9e-41
CCDS59280.1 RDM1 gene_id:201299|Hs108|chr17 ( 143) 677 165.5 2e-41
>>CCDS11301.1 RDM1 gene_id:201299|Hs108|chr17 (284 aa)
initn: 1886 init1: 1886 opt: 1886 Z-score: 2369.1 bits: 446.2 E(32554): 1.2e-125
Smith-Waterman score: 1886; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
190 200 210 220 230 240
250 260 270 280
pF1KE0 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
250 260 270 280
>>CCDS54109.1 RDM1 gene_id:201299|Hs108|chr17 (261 aa)
initn: 1681 init1: 1681 opt: 1681 Z-score: 2112.6 bits: 398.6 E(32554): 2.4e-111
Smith-Waterman score: 1681; 99.6% identity (100.0% similar) in 253 aa overlap (32-284:9-261)
10 20 30 40 50 60
pF1KE0 AELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
.:::::::::::::::::::::::::::::
CCDS54 MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
10 20 30
70 80 90 100 110 120
pF1KE0 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 EPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVR
160 170 180 190 200 210
250 260 270 280
pF1KE0 CEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
:::::::::::::::::::::::::::::::::::::::::::
CCDS54 CEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
220 230 240 250 260
>>CCDS42299.1 RDM1 gene_id:201299|Hs108|chr17 (236 aa)
initn: 1458 init1: 1458 opt: 1458 Z-score: 1833.5 bits: 346.9 E(32554): 8.3e-96
Smith-Waterman score: 1458; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLGKTVLIILEVLQFQ
190 200 210 220 230
250 260 270 280
pF1KE0 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
>>CCDS54111.1 RDM1 gene_id:201299|Hs108|chr17 (251 aa)
initn: 1675 init1: 1261 opt: 1261 Z-score: 1585.9 bits: 301.2 E(32554): 5.1e-82
Smith-Waterman score: 1613; 88.4% identity (88.4% similar) in 284 aa overlap (1-284:1-251)
10 20 30 40 50 60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
::::::::: ::::::::::::::::::
CCDS54 EEPMDKVEE---------------------------------ESGKIAVEYRPSEDIVGV
190 200
250 260 270 280
pF1KE0 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
210 220 230 240 250
>>CCDS59281.1 RDM1 gene_id:201299|Hs108|chr17 (228 aa)
initn: 1470 init1: 1056 opt: 1056 Z-score: 1329.4 bits: 253.6 E(32554): 9.9e-68
Smith-Waterman score: 1408; 86.6% identity (87.0% similar) in 253 aa overlap (32-284:9-228)
10 20 30 40 50 60
pF1KE0 AELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
.:::::::::::::::::::::::::::::
CCDS59 MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
10 20 30
70 80 90 100 110 120
pF1KE0 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 EPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVR
:::::::: :::::::::::::::::::
CCDS59 EPMDKVEE---------------------------------ESGKIAVEYRPSEDIVGVR
160 170 180
250 260 270 280
pF1KE0 CEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
:::::::::::::::::::::::::::::::::::::::::::
CCDS59 CEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
190 200 210 220
>>CCDS54110.1 RDM1 gene_id:201299|Hs108|chr17 (166 aa)
initn: 882 init1: 882 opt: 882 Z-score: 1113.4 bits: 213.1 E(32554): 1.1e-55
Smith-Waterman score: 882; 99.3% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
:::::::::::::.
CCDS54 YFGFNGCSKRIIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
130 140 150 160
>>CCDS82109.1 RDM1 gene_id:201299|Hs108|chr17 (139 aa)
initn: 881 init1: 881 opt: 881 Z-score: 1113.3 bits: 212.9 E(32554): 1.1e-55
Smith-Waterman score: 881; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)
10 20 30 40 50 60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
:::::::::::::
CCDS82 YFGFNGCSKRIIKDHYHSL
130
>>CCDS54108.1 RDM1 gene_id:201299|Hs108|chr17 (116 aa)
initn: 676 init1: 676 opt: 676 Z-score: 857.4 bits: 165.2 E(32554): 1.9e-41
Smith-Waterman score: 676; 99.0% identity (100.0% similar) in 102 aa overlap (32-133:9-110)
10 20 30 40 50 60
pF1KE0 AELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
.:::::::::::::::::::::::::::::
CCDS54 MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
10 20 30
70 80 90 100 110 120
pF1KE0 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
::::::::::::
CCDS54 FGFNGCSKRIIKDHYHSL
100 110
>>CCDS59280.1 RDM1 gene_id:201299|Hs108|chr17 (143 aa)
initn: 676 init1: 676 opt: 677 Z-score: 857.2 bits: 165.5 E(32554): 2e-41
Smith-Waterman score: 677; 98.1% identity (100.0% similar) in 103 aa overlap (32-134:9-111)
10 20 30 40 50 60
pF1KE0 AELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
.:::::::::::::::::::::::::::::
CCDS59 MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
10 20 30
70 80 90 100 110 120
pF1KE0 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
::::::::::::.
CCDS59 FGFNGCSKRIIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
100 110 120 130 140
284 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:49:43 2016 done: Sat Nov 5 02:49:43 2016
Total Scan time: 2.260 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]