FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0706, 407 aa
  1>>>pF1KE0706 407 - 407 aa - 407 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.3083+/-0.00126; mu= -14.6907+/- 0.076
 mean_var=709.3987+/-144.790, 0's: 0 Z-trim(117.4): 82  B-trim: 0 in 0/53
 Lambda= 0.048154
 statistics sampled from 18060 (18136) to 18060 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.557), width:  16
 Scan time:  3.670

The best scores are:                                      opt bits E(32554)
CCDS12065.1 DAZAP1 gene_id:26528|Hs108|chr19       ( 407) 3005 223.2 3.4e-58
CCDS12066.1 DAZAP1 gene_id:26528|Hs108|chr19       ( 378) 2573 193.2 3.5e-49


>>CCDS12065.1 DAZAP1 gene_id:26528|Hs108|chr19            (407 aa)
 initn: 3005 init1: 3005 opt: 3005  Z-score: 1158.3  bits: 223.2 E(32554): 3.4e-58
Smith-Waterman score: 3005; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)

               10        20        30        40        50        60
pF1KE0 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYAGYGQDLSGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYAGYGQDLSGFG
              310       320       330       340       350       360

              370       380       390       400       
pF1KE0 QGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGFHPYRR
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGFHPYRR
              370       380       390       400       

>>CCDS12066.1 DAZAP1 gene_id:26528|Hs108|chr19            (378 aa)
 initn: 2711 init1: 2568 opt: 2573  Z-score: 996.5  bits: 193.2 E(32554): 3.5e-49
Smith-Waterman score: 2573; 96.7% identity (97.5% similar) in 365 aa overlap (1-363:1-365)

               10        20        30        40        50        60
pF1KE0 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP
              250       260       270       280       290       300

              310       320       330       340       350          
pF1KE0 PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYA--GYGQDLSG
       :::::::::::::::::::::::::::::::::::::::::::::::::.  .:.    :
CCDS12 PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGLGSYSPAPPG
              310       320       330       340       350       360

      360       370       380       390       400       
pF1KE0 FGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGFHPYRR
        :  :                                            
CCDS12 CGPHFVYSLMVRLSSDVA                               
              370                                       




407 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:23:14 2016 done: Sat Nov  5 18:23:15 2016
 Total Scan time:  3.670 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]