Result of FASTA (ccds) for
pF1KE0709
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0709, 295 aa
1>>>pF1KE0709 295 - 295 aa - 295 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7163+/-0.000786; mu= 13.2721+/- 0.048
mean_var=70.1502+/-13.711, 0's: 0 Z-trim(107.8): 31 B-trim: 9 in 1/49
Lambda= 0.153130
statistics sampled from 9754 (9775) to 9754 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.3), width: 16
Scan time: 2.460
The best scores are: opt bits E(32554)
CCDS3515.1 STAP1 gene_id:26228|Hs108|chr4 ( 295) 1932 435.7 2e-122
CCDS45926.1 STAP2 gene_id:55620|Hs108|chr19 ( 403) 324 80.5 2.3e-15
CCDS12128.1 STAP2 gene_id:55620|Hs108|chr19 ( 449) 324 80.5 2.5e-15
>>CCDS3515.1 STAP1 gene_id:26228|Hs108|chr4 (295 aa)
initn: 1932 init1: 1932 opt: 1932 Z-score: 2311.4 bits: 435.7 E(32554): 2e-122
Smith-Waterman score: 1932; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KE0 MMAKKPPKPAPRRIFQERLKITALPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MMAKKPPKPAPRRIFQERLKITALPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 ELSVPQNVSLLPGQVIKLHEVLEREKKRRIETEQSTSVEKEKEPTEDYVDVLNPMPACFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ELSVPQNVSLLPGQVIKLHEVLEREKKRRIETEQSTSVEKEKEPTEDYVDVLNPMPACFY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 TVSRKEATEMLQKNPSLGNMILRPGSDSRNYSITIRQEIDIPRIKHYKVMSVGQNYTIEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TVSRKEATEMLQKNPSLGNMILRPGSDSRNYSITIRQEIDIPRIKHYKVMSVGQNYTIEL
190 200 210 220 230 240
250 260 270 280 290
pF1KE0 EKPVTLPNLFSVIDYFVKETRGNLRPFICSTDENTGQEPSMEGRSEKLKKNPHIA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EKPVTLPNLFSVIDYFVKETRGNLRPFICSTDENTGQEPSMEGRSEKLKKNPHIA
250 260 270 280 290
>>CCDS45926.1 STAP2 gene_id:55620|Hs108|chr19 (403 aa)
initn: 513 init1: 202 opt: 324 Z-score: 389.4 bits: 80.5 E(32554): 2.3e-15
Smith-Waterman score: 515; 33.9% identity (63.9% similar) in 277 aa overlap (3-272:4-249)
10 20 30 40 50
pF1KE0 MMAKKPPK-PAPRRIFQERLKITALPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYT
: .::. : :. .. . :.:.:: : :.:...:. :.: :..::.
CCDS45 MASALRPPRVPKPKGVLPSH--------YYESFLEKKGPCDRDYKKFWAGLQGLTIYFYN
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 DKKSIIYVDKLDIVDLTCLTEQ---NSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGF
..... .:.::.. . ::.. .:.. ..:.:.: .:...:.:. : : :.::
CCDS45 SNRDFQHVEKLNLGAFEKLTDEIPWGSSRDPGTHFSLILRDQEIKFKVETLECREMWKGF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 ILTVTELSVPQNVSLLPGQVIKLHEVLEREKKRR-IETEQSTSVEKEKEPTEDYVDVLNP
::::.:: :: ...::::.. . ::: .:. :: .::
CCDS45 ILTVVELRVPTDLTLLPGHLYMMSEVLAKEEARRALET----------------------
120 130 140 150
180 190 200 210 220 230
pF1KE0 MPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSRN-YSITIRQEIDIPRI-KHYKVMSV
:.:: ::: :: .:.. : ::..:::..:. . :.: :: . .. .::::
CCDS45 -PSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKRE
160 170 180 190 200
240 250 260 270 280 290
pF1KE0 GQNYTIELEKPVTLPNLFSVIDYFVKETRGNLRPFICSTDENTGQEPSMEGRSEKLKKNP
: .:.:..:.: . .: .:..:::..:. : ::. . :
CCDS45 GPKYVIDVEQPFSCTSLDAVVNYFVSHTKKALVPFLLDEDYEKVLGYVEADKENGENVWV
210 220 230 240 250 260
pF1KE0 HIA
CCDS45 APSAPGPGPAPCTGGPKPLSPASSQDKLPPLPPLPNQEENYVTPIGDGPAVDYENQDVAS
270 280 290 300 310 320
>>CCDS12128.1 STAP2 gene_id:55620|Hs108|chr19 (449 aa)
initn: 513 init1: 202 opt: 324 Z-score: 388.7 bits: 80.5 E(32554): 2.5e-15
Smith-Waterman score: 515; 33.9% identity (63.9% similar) in 277 aa overlap (3-272:4-249)
10 20 30 40 50
pF1KE0 MMAKKPPK-PAPRRIFQERLKITALPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYT
: .::. : :. .. . :.:.:: : :.:...:. :.: :..::.
CCDS12 MASALRPPRVPKPKGVLPSH--------YYESFLEKKGPCDRDYKKFWAGLQGLTIYFYN
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 DKKSIIYVDKLDIVDLTCLTEQ---NSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGF
..... .:.::.. . ::.. .:.. ..:.:.: .:...:.:. : : :.::
CCDS12 SNRDFQHVEKLNLGAFEKLTDEIPWGSSRDPGTHFSLILRDQEIKFKVETLECREMWKGF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 ILTVTELSVPQNVSLLPGQVIKLHEVLEREKKRR-IETEQSTSVEKEKEPTEDYVDVLNP
::::.:: :: ...::::.. . ::: .:. :: .::
CCDS12 ILTVVELRVPTDLTLLPGHLYMMSEVLAKEEARRALET----------------------
120 130 140 150
180 190 200 210 220 230
pF1KE0 MPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSRN-YSITIRQEIDIPRI-KHYKVMSV
:.:: ::: :: .:.. : ::..:::..:. . :.: :: . .. .::::
CCDS12 -PSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKRE
160 170 180 190 200
240 250 260 270 280 290
pF1KE0 GQNYTIELEKPVTLPNLFSVIDYFVKETRGNLRPFICSTDENTGQEPSMEGRSEKLKKNP
: .:.:..:.: . .: .:..:::..:. : ::. . :
CCDS12 GPKYVIDVEQPFSCTSLDAVVNYFVSHTKKALVPFLLDEDYEKVLGYVEADKENGENVWV
210 220 230 240 250 260
pF1KE0 HIA
CCDS12 APSAPGPGPAPCTGGPKPLSPASSQDKLPPLPPLPNQEENYVTPIGDGPAVDYENQDVAS
270 280 290 300 310 320
295 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:54:29 2016 done: Sat Nov 5 02:54:29 2016
Total Scan time: 2.460 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]