FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0712, 411 aa
  1>>>pF1KE0712 411 - 411 aa - 411 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6414+/-0.000832; mu= -0.3170+/- 0.050
 mean_var=287.9239+/-61.022, 0's: 0 Z-trim(117.2): 22  B-trim: 863 in 1/53
 Lambda= 0.075585
 statistics sampled from 17901 (17920) to 17901 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.55), width:  16
 Scan time:  3.280

The best scores are:                                      opt bits E(32554)
CCDS11335.1 STAC2 gene_id:342667|Hs108|chr17       ( 411) 2825 320.8 1.5e-87
CCDS2662.1 STAC gene_id:6769|Hs108|chr3            ( 402)  985 120.2 3.6e-27
CCDS77722.1 STAC gene_id:6769|Hs108|chr3           ( 341)  679 86.7 3.5e-17


>>CCDS11335.1 STAC2 gene_id:342667|Hs108|chr17            (411 aa)
 initn: 2825 init1: 2825 opt: 2825  Z-score: 1685.5  bits: 320.8 E(32554): 1.5e-87
Smith-Waterman score: 2825; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)

               10        20        30        40        50        60
pF1KE0 MTEMSEKENEPDDAATHSPPGTVSALQETKLQRFKRSLSLKTILRSKSLENFFLRSGSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTEMSEKENEPDDAATHSPPGTVSALQETKLQRFKRSLSLKTILRSKSLENFFLRSGSEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KCPTEVLLTPPTPLPPPSPPPTASDRGLATPSPSPCPVPRPLAALKPVRLHSFQEHVFKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KCPTEVLLTPPTPLPPPSPPPTASDRGLATPSPSPCPVPRPLAALKPVRLHSFQEHVFKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ASPCELCHQLIVGNSKQGLRCKMCKVSVHLWCSEEISHQQCPGKTSTSFRRNFSSPLLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ASPCELCHQLIVGNSKQGLRCKMCKVSVHLWCSEEISHQQCPGKTSTSFRRNFSSPLLVH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EPPPVCATSKESPPTGDSGKVDPVYETLRYGTSLALMNRSSFSSTSESPTRSLSERDELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EPPPVCATSKESPPTGDSGKVDPVYETLRYGTSLALMNRSSFSSTSESPTRSLSERDELT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EDGEGSIRSSEEGPGDSASPVFTAPAESEGPGPEEKSPGQQLPKATLRKDVGPMYSYVAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EDGEGSIRSSEEGPGDSASPVFTAPAESEGPGPEEKSPGQQLPKATLRKDVGPMYSYVAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 YKFLPQENNDLALQPGDRIMLVDDSNEDWWKGKIGDRVGFFPANFVQRVRPGENVWRCCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YKFLPQENNDLALQPGDRIMLVDDSNEDWWKGKIGDRVGFFPANFVQRVRPGENVWRCCQ
              310       320       330       340       350       360

              370       380       390       400       410 
pF1KE0 PFSGNKEQGYMSLKENQICVGVGRSKDADGFIRVSSGKKRGLVPVDALTEI
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PFSGNKEQGYMSLKENQICVGVGRSKDADGFIRVSSGKKRGLVPVDALTEI
              370       380       390       400       410 

>>CCDS2662.1 STAC gene_id:6769|Hs108|chr3                 (402 aa)
 initn: 961 init1: 452 opt: 985  Z-score: 601.3  bits: 120.2 E(32554): 3.6e-27
Smith-Waterman score: 1090; 46.4% identity (70.8% similar) in 414 aa overlap (11-411:16-402)

                    10         20         30        40         50  
pF1KE0      MTEMSEKENEPDDAA-THSPPGTVS-ALQETKLQRFKRSLSLKTI-LRSKSLENF
                      : .:. ...::. .: . ::.:::..:::::.::  ::::: .::
CCDS26 MIPPSSPREDGVDGLPKEAVGAEQPPSPASTSSQESKLQKLKRSLSFKTKSLRSKSADNF
               10        20        30        40        50        60

              60        70        80        90       100        110
pF1KE0 FLRSGSE-LKCPTEVLLTPPTPLPPPSPPPTASDRGLATPSPSPCPVPRPLAALKPV-RL
       : :..:: .:  .. ...  .:   : : :     :  : .:.        :.:.:  . 
CCDS26 FQRTNSEDMKLQAH-MVAEISPSSSPLPAP-----GSLTSTPAR-------AGLHPGGKA
               70         80             90              100       

              120       130        140       150       160         
pF1KE0 HSFQEHVFKRASPCELCHQLIVG-NSKQGLRCKMCKVSVHLWCSEEISHQQCPGKTSTSF
       :.:::..::. . :..:...::: :.:.::::: ::.:.:  :.. .. :.: ::   .:
CCDS26 HAFQEYIFKKPTFCDVCNHMIVGTNAKHGLRCKACKMSIHHKCTDGLAPQRCMGKLPKGF
       110       120       130       140       150       160       

     170       180       190       200       210        220        
pF1KE0 RRNFSSPLLVHEPPPVCATSKESPPTGDSGKVDPVYETLRYGTSLAL-MNRSSFSSTSES
       :: .:::::.::    :   ::  : . ..::::::::::.:::::   ...: .: :.:
CCDS26 RRYYSSPLLIHEQFG-CI--KEVMPIACGNKVDPVYETLRFGTSLAQRTKKGSSGSGSDS
       170       180          190       200       210       220    

      230        240       250           260       270       280   
pF1KE0 PTR-SLSERDELTEDGEGSIRSSEEGPG----DSASPVFTAPAESEGPGPEEKSPGQQLP
       : : : :.  :. :...:       : :      .. ::: :   :.   . ..:.... 
CCDS26 PHRTSTSDLVEVPEEANGP------GGGYDLRKRSNSVFTYP---ENGTDDFRDPAKNIN
          230       240             250       260          270     

            290       300       310       320       330       340  
pF1KE0 -KATLRKDVGPMYSYVALYKFLPQENNDLALQPGDRIMLVDDSNEDWWKGKIGDRVGFFP
        ...: ::   : .:::::::.::::.:: ..::: : :..::::::::::: ::.::::
CCDS26 HQGSLSKDPLQMNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFP
         280       290       300       310       320       330     

            350       360       370       380       390       400  
pF1KE0 ANFVQRVRPGENVWRCCQPFSGNKEQGYMSLKENQICVGVGRSKDADGFIRVSSGKKRGL
       ::::::.. .:...:: . : : :::: ..::::::::.    .. :::::: ::::.::
CCDS26 ANFVQRLQQNEKIFRCVRTFIGCKEQGQITLKENQICVS--SEEEQDGFIRVLSGKKKGL
         340       350       360       370         380       390   

            410 
pF1KE0 VPVDALTEI
       .:.:.: .:
CCDS26 IPLDVLENI
           400  

>>CCDS77722.1 STAC gene_id:6769|Hs108|chr3                (341 aa)
 initn: 842 init1: 452 opt: 679  Z-score: 421.9  bits: 86.7 E(32554): 3.5e-17
Smith-Waterman score: 766; 39.2% identity (60.8% similar) in 413 aa overlap (11-411:16-341)

                    10         20         30        40         50  
pF1KE0      MTEMSEKENEPDDAA-THSPPGTVS-ALQETKLQRFKRSLSLKTI-LRSKSLENF
                      : .:. ...::. .: . ::.:::..:::::.::  ::::: .::
CCDS77 MIPPSSPREDGVDGLPKEAVGAEQPPSPASTSSQESKLQKLKRSLSFKTKSLRSKSADNF
               10        20        30        40        50        60

              60        70        80        90       100        110
pF1KE0 FLRSGSE-LKCPTEVLLTPPTPLPPPSPPPTASDRGLATPSPSPCPVPRPLAALKPV-RL
       : :..:: .:  .. ...  .:   : : :     :  : .:.        :.:.:  . 
CCDS77 FQRTNSEDMKLQAH-MVAEISPSSSPLPAP-----GSLTSTPAR-------AGLHPGGKA
               70         80             90              100       

              120       130       140       150       160       170
pF1KE0 HSFQEHVFKRASPCELCHQLIVGNSKQGLRCKMCKVSVHLWCSEEISHQQCPGKTSTSFR
       :.:::..::. . :..:...::.                           :         
CCDS77 HAFQEYIFKKPTFCDVCNHMIVA---------------------------C---------
       110       120       130                                     

              180       190       200       210        220         
pF1KE0 RNFSSPLLVHEPPPVCATSKESPPTGDSGKVDPVYETLRYGTSLAL-MNRSSFSSTSESP
                                  ..::::::::::.:::::   ...: .: :.::
CCDS77 ---------------------------GNKVDPVYETLRFGTSLAQRTKKGSSGSGSDSP
                                        140       150       160    

     230        240       250           260       270       280    
pF1KE0 TR-SLSERDELTEDGEGSIRSSEEGPG----DSASPVFTAPAESEGPGPEEKSPGQQLP-
        : : :.  :. :...:       : :      .. ::: :   :.   . ..:....  
CCDS77 HRTSTSDLVEVPEEANGP------GGGYDLRKRSNSVFTYP---ENGTDDFRDPAKNINH
          170       180             190          200       210     

           290       300       310       320       330       340   
pF1KE0 KATLRKDVGPMYSYVALYKFLPQENNDLALQPGDRIMLVDDSNEDWWKGKIGDRVGFFPA
       ...: ::   : .:::::::.::::.:: ..::: : :..::::::::::: ::.:::::
CCDS77 QGSLSKDPLQMNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPA
         220       230       240       250       260       270     

           350       360       370       380       390       400   
pF1KE0 NFVQRVRPGENVWRCCQPFSGNKEQGYMSLKENQICVGVGRSKDADGFIRVSSGKKRGLV
       :::::.. .:...:: . : : :::: ..::::::::.    .. :::::: ::::.::.
CCDS77 NFVQRLQQNEKIFRCVRTFIGCKEQGQITLKENQICVS--SEEEQDGFIRVLSGKKKGLI
         280       290       300       310         320       330   

           410 
pF1KE0 PVDALTEI
       :.:.: .:
CCDS77 PLDVLENI
           340 




411 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:55:39 2016 done: Sat Nov  5 02:55:40 2016
 Total Scan time:  3.280 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]