FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0713, 299 aa
  1>>>pF1KE0713 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5674+/-0.000723; mu= 14.3815+/- 0.043
 mean_var=74.7223+/-15.397, 0's: 0 Z-trim(110.9): 66  B-trim: 1087 in 2/48
 Lambda= 0.148371
 statistics sampled from 11886 (11957) to 11886 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.367), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS6584.2 ARHGEF39 gene_id:84904|Hs108|chr9       ( 335) 1991 435.1 3.5e-122


>>CCDS6584.2 ARHGEF39 gene_id:84904|Hs108|chr9            (335 aa)
 initn: 1990 init1: 1990 opt: 1991  Z-score: 2307.0  bits: 435.1 E(32554): 3.5e-122
Smith-Waterman score: 1991; 98.0% identity (98.3% similar) in 298 aa overlap (2-299:41-335)

                                            10        20        30 
pF1KE0                              MLGVCQTLKQYFLGILKAKGTLRPPERQALF
                                     ::.  :   :::::::::::::::::::::
CCDS65 PVQEQRARWERKRACTARELLETERRYQEQLGLVAT---YFLGILKAKGTLRPPERQALF
               20        30        40           50        60       

              40        50        60        70        80        90 
pF1KE0 GSWELIYGASQELLPYLEGGCWGQGLEGFCRHLELYNQFAANSERSQTTLQEQLKKNKGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GSWELIYGASQELLPYLEGGCWGQGLEGFCRHLELYNQFAANSERSQTTLQEQLKKNKGF
        70        80        90       100       110       120       

             100       110       120       130       140       150 
pF1KE0 RRFVRLQEGRPEFGGLQLQDLLPLPLQRLQQYENLVVALAENTGPNSPDHQQLTRAARLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RRFVRLQEGRPEFGGLQLQDLLPLPLQRLQQYENLVVALAENTGPNSPDHQQLTRAARLI
       130       140       150       160       170       180       

             160       170       180       190       200       210 
pF1KE0 SETAQRVHTIGQKQKNDQHLRRVQALLSGRQAKGLTSGRWFLRQGWLLVVPPHGEPRPRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SETAQRVHTIGQKQKNDQHLRRVQALLSGRQAKGLTSGRWFLRQGWLLVVPPHGEPRPRM
       190       200       210       220       230       240       

             220       230       240       250       260       270 
pF1KE0 FFLFTDVLLMAKPRPPLHLLRSGTFACKALYPMAQCHLSRVFGHSGGPCGGLLSLSFPHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FFLFTDVLLMAKPRPPLHLLRSGTFACKALYPMAQCHLSRVFGHSGGPCGGLLSLSFPHE
       250       260       270       280       290       300       

             280       290         
pF1KE0 KLLLMSTDQEELSRWYHSLTWAISSQKN
       ::::::::::::::::::::::::::::
CCDS65 KLLLMSTDQEELSRWYHSLTWAISSQKN
       310       320       330     




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:16:25 2016 done: Sat Nov  5 04:16:25 2016
 Total Scan time:  2.450 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]