FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0722, 415 aa
  1>>>pF1KE0722 415 - 415 aa - 415 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5646+/-0.00114; mu= -1.4713+/- 0.067
 mean_var=322.3106+/-67.716, 0's: 0 Z-trim(110.2): 69  B-trim: 17 in 1/52
 Lambda= 0.071439
 statistics sampled from 11416 (11450) to 11416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.352), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS45312.1 PSTPIP1 gene_id:9051|Hs108|chr15       ( 416) 2738 296.1   4e-80
CCDS81910.1 PSTPIP1 gene_id:9051|Hs108|chr15       ( 397) 1832 202.7   5e-52
CCDS32820.2 PSTPIP2 gene_id:9050|Hs108|chr18       ( 334)  969 113.7 2.6e-25


>>CCDS45312.1 PSTPIP1 gene_id:9051|Hs108|chr15            (416 aa)
 initn: 2738 init1: 2738 opt: 2738  Z-score: 1551.9  bits: 296.1 E(32554): 4e-80
Smith-Waterman score: 2738; 100.0% identity (100.0% similar) in 415 aa overlap (1-415:2-416)

                10        20        30        40        50         
pF1KE0  MPQLQFKDAFWCRDFTAHTGYEVLLQRLLDGRKMCKDMEELLRQRAQAEERYGKELVQI
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MMPQLQFKDAFWCRDFTAHTGYEVLLQRLLDGRKMCKDMEELLRQRAQAEERYGKELVQI
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 ARKAGGQTEINSLRASFDSLKQQMENVGSSHIQLALTLREELRSLEEFRERQKEQRKKYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ARKAGGQTEINSLRASFDSLKQQMENVGSSHIQLALTLREELRSLEEFRERQKEQRKKYE
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 AVMDRVQKSKLSLYKKAMESKKTYEQKCRDADDAEQAFERISANGHQKQVEKSQNKARQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AVMDRVQKSKLSLYKKAMESKKTYEQKCRDADDAEQAFERISANGHQKQVEKSQNKARQC
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE0 KDSATEAERVYRQSIAQLEKVRAEWEQEHRTTCEAFQLQEFDRLTILRNALWVHSNQLSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KDSATEAERVYRQSIAQLEKVRAEWEQEHRTTCEAFQLQEFDRLTILRNALWVHSNQLSM
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KE0 QCVKDDELYEEVRLTLEGCSIDADIDSFIQAKSTGTEPPAPVPYQNYYDREVTPLTSSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QCVKDDELYEEVRLTLEGCSIDADIDSFIQAKSTGTEPPAPVPYQNYYDREVTPLTSSPG
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE0 IQPSCGMIKRFSGLLHGSPKTTSLAASAASTETLTPTPERNEGVYTAIAVQEIQGNPASP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IQPSCGMIKRFSGLLHGSPKTTSLAASAASTETLTPTPERNEGVYTAIAVQEIQGNPASP
              310       320       330       340       350       360

     360       370       380       390       400       410     
pF1KE0 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL
              370       380       390       400       410      

>>CCDS81910.1 PSTPIP1 gene_id:9051|Hs108|chr15            (397 aa)
 initn: 2539 init1: 1827 opt: 1832  Z-score: 1047.5  bits: 202.7 E(32554): 5e-52
Smith-Waterman score: 2477; 93.5% identity (94.7% similar) in 415 aa overlap (1-415:2-397)

                10        20        30        40        50         
pF1KE0  MPQLQFKDAFWCRDFTAHTGYEVLLQRLLDGRKMCKDMEELLRQRAQAEERYGKELVQI
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MMPQLQFKDAFWCRDFTAHTGYEVLLQRLLDGRKMCKDMEELLRQRAQAEERYGKELVQI
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 ARKAGGQTEINSLRASFDSLKQQMENVGSSHIQLALTLREELRSLEEFRERQKEQRKKYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ARKAGGQTEINSLRASFDSLKQQMENVGSSHIQLALTLREELRSLEEFRERQKEQRKKYE
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 AVMDRVQKSKLSLYKKAMESKKTYEQKCRDADDAEQAFERISANGHQKQVEKSQNKARQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AVMDRVQKSKLSLYKKAMESKKTYEQKCRDADDAEQAFERISANGHQKQVEKSQNKARQC
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE0 KDSATEAERVYRQSIAQLEKVRAEWEQEHRTTCEAFQLQEFDRLTILRNALWVHSNQLSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KDSATEAERVYRQSIAQLEKVRAEWEQEHRTTCEAFQLQEFDRLTILRNALWVHSNQLSM
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KE0 QCVKDDELYEEVRLTLEGCSIDADIDSFIQAKSTGTEPPAPVPYQNYYDREVTPLTSSPG
       :::::::::::::::::::::::::::::::::::::::. :            :..: .
CCDS81 QCVKDDELYEEVRLTLEGCSIDADIDSFIQAKSTGTEPPGEVR-----------LADSAA
              250       260       270       280                    

     300       310       320       330       340       350         
pF1KE0 IQPSCGMIKRFSGLLHGSPKTTSLAASAASTETLTPTPERNEGVYTAIAVQEIQGNPASP
               .:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 --------SRFSGLLHGSPKTTSLAASAASTETLTPTPERNEGVYTAIAVQEIQGNPASP
             290       300       310       320       330       340 

     360       370       380       390       400       410     
pF1KE0 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL
             350       360       370       380       390       

>>CCDS32820.2 PSTPIP2 gene_id:9050|Hs108|chr18            (334 aa)
 initn: 964 init1: 778 opt: 969  Z-score: 567.7  bits: 113.7 E(32554): 2.6e-25
Smith-Waterman score: 969; 47.9% identity (76.1% similar) in 305 aa overlap (1-303:1-304)

               10        20        30        40        50        60
pF1KE0 MPQLQFKDAFWCRDFTAHTGYEVLLQRLLDGRKMCKDMEELLRQRAQAEERYGKELVQIA
       : .  ::  ::  :. .  ::. ..:.: .::: ::..:..:..::  ::::::.:....
CCDS32 MTRSLFKGNFWSADILSTIGYDNIIQHLNNGRKNCKEFEDFLKERAAIEERYGKDLLNLS
               10        20        30        40        50        60

                70        80        90       100       110         
pF1KE0 RKAG-GQTEINSLRASFDSLKQQMENVGSSHIQLALTLREELRSLEEFRERQKEQRKKYE
       ::   ::.:::.:. ... .:::..::.. ::::: .:::: :..:::::.:: :::: :
CCDS32 RKKPCGQSEINTLKRALEVFKQQVDNVAQCHIQLAQSLREEARKMEEFREKQKLQRKKTE
               70        80        90       100       110       120

     120       130       140       150       160        170        
pF1KE0 AVMDRVQKSKLSLYKKAMESKKTYEQKCRDADDAEQAFERISANG-HQKQVEKSQNKARQ
        .:: ..:.:   .::.:..::.::::::: :.::::  : :::  . :: ::   :   
CCDS32 LIMDAIHKQKSLQFKKTMDAKKNYEQKCRDKDEAEQAVSR-SANLVNPKQQEKLFVKLAT
              130       140       150       160        170         

      180       190       200       210       220       230        
pF1KE0 CKDSATEAERVYRQSIAQLEKVRAEWEQEHRTTCEAFQLQEFDRLTILRNALWVHSNQLS
        : .. .....:   :. :.::: ::..::  .::::. :: .:....:::::.: ::::
CCDS32 SKTAVEDSDKAYMLHIGTLDKVREEWQSEHIKACEAFEAQECERINFFRNALWLHVNQLS
     180       190       200       210       220       230         

      240       250       260       270       280       290        
pF1KE0 MQCVKDDELYEEVRLTLEGCSIDADIDSFIQAKSTGTEPPAPVPYQNYYDREVTPLTSSP
       .::: .::.::.:: .:: :::. ::. :.. ..::  ::::. :.:.:. . . . .. 
CCDS32 QQCVTSDEMYEQVRKSLEMCSIQRDIEYFVNQRKTGQIPPAPIMYENFYSSQKNAVPAGK
     240       250       260       270       280       290         

      300       310       320       330       340       350        
pF1KE0 GIQPSCGMIKRFSGLLHGSPKTTSLAASAASTETLTPTPERNEGVYTAIAVQEIQGNPAS
       .  :.                                                       
CCDS32 ATGPNLARRGPLPIPKSSPDDPNYSLVDDYSLLYQ                         
     300       310       320       330                             




415 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:58:36 2016 done: Sat Nov  5 02:58:37 2016
 Total Scan time:  2.740 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]