Result of FASTA (ccds) for
pF1KE0723
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0723, 306 aa
1>>>pF1KE0723 306 - 306 aa - 306 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6718+/-0.0011; mu= 9.2139+/- 0.067
mean_var=308.4632+/-62.879, 0's: 0 Z-trim(113.3): 52 B-trim: 0 in 0/51
Lambda= 0.073025
statistics sampled from 13878 (13912) to 13878 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.427), width: 16
Scan time: 2.420
The best scores are: opt bits E(32554)
CCDS13230.1 RALY gene_id:22913|Hs108|chr20 ( 306) 2002 223.9 1.2e-58
CCDS13229.1 RALY gene_id:22913|Hs108|chr20 ( 290) 1182 137.5 1.2e-32
CCDS75760.1 RALYL gene_id:138046|Hs108|chr8 ( 280) 977 115.9 3.7e-26
CCDS45079.1 HNRNPC gene_id:3183|Hs108|chr14 ( 293) 748 91.8 7e-19
CCDS30591.1 HNRNPCL1 gene_id:343069|Hs108|chr1 ( 293) 694 86.1 3.6e-17
CCDS76105.1 HNRNPCL2 gene_id:440563|Hs108|chr1 ( 293) 682 84.8 8.7e-17
CCDS76107.1 HNRNPCL4 gene_id:101060301|Hs108|chr1 ( 293) 675 84.1 1.4e-16
CCDS72705.1 HNRNPCL3 gene_id:649330|Hs108|chr1 ( 293) 675 84.1 1.4e-16
CCDS55253.1 RALYL gene_id:138046|Hs108|chr8 ( 291) 590 75.1 7.1e-14
CCDS55252.1 RALYL gene_id:138046|Hs108|chr8 ( 304) 590 75.1 7.3e-14
CCDS41915.1 HNRNPC gene_id:3183|Hs108|chr14 ( 306) 545 70.4 2e-12
>>CCDS13230.1 RALY gene_id:22913|Hs108|chr20 (306 aa)
initn: 2002 init1: 2002 opt: 2002 Z-score: 1166.3 bits: 223.9 E(32554): 1.2e-58
Smith-Waterman score: 2002; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
250 260 270 280 290 300
pF1KE0 DDGALQ
::::::
CCDS13 DDGALQ
>>CCDS13229.1 RALY gene_id:22913|Hs108|chr20 (290 aa)
initn: 1867 init1: 1182 opt: 1182 Z-score: 699.6 bits: 137.5 E(32554): 1.2e-32
Smith-Waterman score: 1839; 94.8% identity (94.8% similar) in 306 aa overlap (1-306:1-290)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIY-----------
70 80 90 100
130 140 150 160 170 180
pF1KE0 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 -----RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
230 240 250 260 270 280
pF1KE0 DDGALQ
::::::
CCDS13 DDGALQ
290
>>CCDS75760.1 RALYL gene_id:138046|Hs108|chr8 (280 aa)
initn: 631 init1: 607 opt: 977 Z-score: 583.0 bits: 115.9 E(32554): 3.7e-26
Smith-Waterman score: 977; 69.9% identity (85.8% similar) in 226 aa overlap (1-224:1-222)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
:. : :.::::::::::::::::::::::::.::: :.:.::::::...:::::::::::
CCDS75 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDYY
:: .:::::::: :::.::.::: ::::::::::: ::: : :: ::.::::.::::::
CCDS75 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYSGYVFDYDYY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 RDDFYDRLFDYRGRLSPVPVPRAV-PVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSA
:::::.:::::.::. : : :::: :.:::::.: .:: : .: .:::: ..:.
CCDS75 RDDFYNRLFDYHGRVPP-P-PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA--SGST
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 KIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGG
::::.:::.:: ::::::..::.::.:::.: .:::. ...::
CCDS75 GSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQEECV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 SGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDT
CCDS75 SEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
240 250 260 270 280
>>CCDS45079.1 HNRNPC gene_id:3183|Hs108|chr14 (293 aa)
initn: 728 init1: 508 opt: 748 Z-score: 452.5 bits: 91.8 E(32554): 7e-19
Smith-Waterman score: 749; 46.5% identity (71.6% similar) in 303 aa overlap (7-303:2-289)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
:::::::.::.:.::::::::::: .:::::::.::::::...:::::::.:::
CCDS45 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFV
10 20 30 40 50
70 80 90 100 110
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY-SGYIFDYDY
:: :::.::::: ::.::..:::.::::.:.::: .: : :.::.:. .: :.. .:::.
CCDS45 QYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 YRDDFYDRLFDYRGRLSPVP-VPRAV-PVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTS
:: .:::...: .:. : : . ::: : :: ::. :: :.. : ... :
CCDS45 QRD-YYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNSKSGQRGS
120 130 140 150 160
180 190 200 210 220 230
pF1KE0 SAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGG
: . :::...::::: ::::::...:.:: ::.: :: .. . :.: . ....
CCDS45 SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ-SKQAVEMKNDKSEEEQSSSS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE0 GGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-GLLTHSEEELEHS
. . . ::. . ..: : . ..: ::.. :. .:.: :..
CCDS45 VKKDETNVKMESEGGA--------DDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEG
230 240 250 260 270 280
300
pF1KE0 QDT-DADDGALQ
.: :. .:
CCDS45 EDDRDSANGEDDS
290
>>CCDS30591.1 HNRNPCL1 gene_id:343069|Hs108|chr1 (293 aa)
initn: 602 init1: 481 opt: 694 Z-score: 421.7 bits: 86.1 E(32554): 3.6e-17
Smith-Waterman score: 702; 44.1% identity (70.4% similar) in 304 aa overlap (7-303:2-289)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::: ::.:.::::::::::: .:::::::.::::::..::::::::.:::
CCDS30 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFV
10 20 30 40 50
70 80 90 100 110
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-
::..:..::::: ::.::..:.:..:::.:.::: .: . :.::.:. .: : :: ::
CCDS30 QYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 YRDDFYDRLFDYRGRLSPVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTT
.. :.:: .... .:. : : : : :: :: :.. :: :.. : ...
CCDS30 FQRDYYDGMYSFPARVPP-PPPIALAVVPSKRQRLSGNTSRRGKSG-----FNSKSGKRG
120 130 140 150 160
180 190 200 210 220 230
pF1KE0 SSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGG
:: . :::...::::: ::::::...:.:: ::.: ::. . :.. . ....
CCDS30 SSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE0 GGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-GLLTHSEEELEH
. . . ::. . ..: : : . ..:.::.. :. .:.: :.
CCDS30 MKKDETHVKMESEGGAED---------SAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEE
230 240 250 260 270
300
pF1KE0 SQDT-DADDGALQ
..: :. .:
CCDS30 GEDDRDSTNGQDDS
280 290
>>CCDS76105.1 HNRNPCL2 gene_id:440563|Hs108|chr1 (293 aa)
initn: 589 init1: 468 opt: 682 Z-score: 414.9 bits: 84.8 E(32554): 8.7e-17
Smith-Waterman score: 692; 43.4% identity (70.4% similar) in 304 aa overlap (7-303:2-289)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::: ::.:.::::::::::: .:::::::.::::::..::::::::.:::
CCDS76 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFV
10 20 30 40 50
70 80 90 100 110
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-
::..:..::::: ::.::..:.:. ::.:.::: .: . :.::.:. .: : :: ::
CCDS76 QYDKEKNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 YRDDFYDRLFDYRGRLSPVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTT
.. :.:: .... .:. : : : : :: :: :.. :: :.. : ...
CCDS76 FQRDYYDGMYSFPARVPP-PPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRG
120 130 140 150 160
180 190 200 210 220 230
pF1KE0 SSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGG
:: . :::...::::: ::::::...:.:: ::.: ::. . :.. . ....
CCDS76 SSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE0 GGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-GLLTHSEEELEH
. . . ::. . ..: : : . ..:.::.. :. ..:.. :.
CCDS76 MKKDETHVKMESEGGAED---------SAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEE
230 240 250 260 270
300
pF1KE0 SQDT-DADDGALQ
..:. :. .:
CCDS76 GEDNRDSTNGQDDS
280 290
>>CCDS76107.1 HNRNPCL4 gene_id:101060301|Hs108|chr1 (293 aa)
initn: 650 init1: 481 opt: 675 Z-score: 410.9 bits: 84.1 E(32554): 1.4e-16
Smith-Waterman score: 675; 54.2% identity (77.6% similar) in 214 aa overlap (7-215:2-208)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::: ::.:.::::::::::: .:::::::.::::::..::::::::.:::
CCDS76 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFV
10 20 30 40 50
70 80 90 100 110
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-
::..:..::::: ::.::..:.:..:::.:.::: .: . :.::.:. .: : :: ::
CCDS76 QYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 YRDDFYDRLFDYRGRLSPVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTT
. :.: .... .:. : : : : :: :: :.. :: :.. : ...
CCDS76 LQRDYYGGMYSFPARVPPPP-PIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRG
120 130 140 150 160
180 190 200 210 220 230
pF1KE0 SSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGG
:: . :::...::::: ::::::...:.:: ::.: :.
CCDS76 SSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE0 GGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHS
CCDS76 SKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRAN
230 240 250 260 270 280
>>CCDS72705.1 HNRNPCL3 gene_id:649330|Hs108|chr1 (293 aa)
initn: 650 init1: 481 opt: 675 Z-score: 410.9 bits: 84.1 E(32554): 1.4e-16
Smith-Waterman score: 675; 54.2% identity (77.6% similar) in 214 aa overlap (7-215:2-208)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::: ::.:.::::::::::: .:::::::.::::::..::::::::.:::
CCDS72 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFV
10 20 30 40 50
70 80 90 100 110
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-
::..:..::::: ::.::..:.:..:::.:.::: .: . :.::.:. .: : :: ::
CCDS72 QYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 YRDDFYDRLFDYRGRLSPVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTT
. :.: .... .:. : : : : :: :: :.. :: :.. : ...
CCDS72 LQRDYYGGMYSFPARVPPPP-PIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRG
120 130 140 150 160
180 190 200 210 220 230
pF1KE0 SSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGG
:: . :::...::::: ::::::...:.:: ::.: :.
CCDS72 SSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE0 GGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHS
CCDS72 SKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRAN
230 240 250 260 270 280
>>CCDS55253.1 RALYL gene_id:138046|Hs108|chr8 (291 aa)
initn: 884 init1: 543 opt: 590 Z-score: 362.5 bits: 75.1 E(32554): 7.1e-14
Smith-Waterman score: 940; 66.2% identity (81.9% similar) in 237 aa overlap (1-224:1-233)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
:. : :.::::::::::::::::::::::::.::: :.:.::::::...:::::::::::
CCDS55 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY----------
:: .:::::::: :::.::.::: ::::::::::: ::: : :: ::.:
CCDS55 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 -SGYIFDYDYYRDDFYDRLFDYRGRLSPVPVPRAV-PVKRPRVTVPLVRRVKTNVPVKLF
.::.:::::::::::.:::::.::. : : :::: :.:::::.: .:: : .:
CCDS55 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-P-PRAVIPLKRPRVAVTTTRRGKGVFSMKGG
130 140 150 160 170
170 180 190 200 210 220
pF1KE0 ARSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDG
.:::: ..:. ::::.:::.:: ::::::..::.::.:::.: .:::. ...::
CCDS55 SRSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLE
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE0 GGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTH
CCDS55 ESLVLIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
240 250 260 270 280 290
>>CCDS55252.1 RALYL gene_id:138046|Hs108|chr8 (304 aa)
initn: 884 init1: 543 opt: 590 Z-score: 362.3 bits: 75.1 E(32554): 7.3e-14
Smith-Waterman score: 940; 66.2% identity (81.9% similar) in 237 aa overlap (1-224:14-246)
10 20 30 40
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGR
:. : :.::::::::::::::::::::::::.::: :.:.::::::.
CCDS55 MSKRRRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 VAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAAS
..::::::::::::: .:::::::: :::.::.::: ::::::::::: ::: : :: :
CCDS55 IVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLS
70 80 90 100 110 120
110 120 130 140 150
pF1KE0 AIY-----------SGYIFDYDYYRDDFYDRLFDYRGRLSPVPVPRAV-PVKRPRVTVPL
:.: .::.:::::::::::.:::::.::. : : :::: :.:::::.:
CCDS55 ALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPP-P-PRAVIPLKRPRVAVTT
130 140 150 160 170
160 170 180 190 200 210
pF1KE0 VRRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAE
.:: : .: .:::: ..:. ::::.:::.:: ::::::..::.::.:::.: .
CCDS55 TRRGKGVFSMKGGSRSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQ
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE0 QKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEAR
:::. ...::
CCDS55 QKAEAEAQKKQLEESLVLIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGG
240 250 260 270 280 290
306 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:24:12 2016 done: Sat Nov 5 18:24:12 2016
Total Scan time: 2.420 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]