Result of FASTA (omim) for
pF1KE0723
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0723, 306 aa
1>>>pF1KE0723 306 - 306 aa - 306 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3523+/-0.000417; mu= 10.5670+/- 0.026
mean_var=311.3450+/-62.772, 0's: 0 Z-trim(120.9): 105 B-trim: 56 in 1/57
Lambda= 0.072686
statistics sampled from 36559 (36686) to 36559 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.43), width: 16
Scan time: 8.640
The best scores are: opt bits E(85289)
XP_005260391 (OMIM: 614663) PREDICTED: RNA-binding ( 306) 2002 223.0 6e-58
XP_016883220 (OMIM: 614663) PREDICTED: RNA-binding ( 306) 2002 223.0 6e-58
NP_057951 (OMIM: 614663) RNA-binding protein Raly ( 306) 2002 223.0 6e-58
XP_011526997 (OMIM: 614663) PREDICTED: RNA-binding ( 306) 2002 223.0 6e-58
XP_011526996 (OMIM: 614663) PREDICTED: RNA-binding ( 306) 2002 223.0 6e-58
NP_031393 (OMIM: 614663) RNA-binding protein Raly ( 290) 1182 137.0 4.5e-32
XP_005260393 (OMIM: 614663) PREDICTED: RNA-binding ( 290) 1182 137.0 4.5e-32
XP_016868557 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 977 115.4 1.3e-25
XP_016868558 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 977 115.4 1.3e-25
XP_016868556 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 977 115.4 1.3e-25
XP_016868555 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 977 115.4 1.3e-25
NP_001274172 (OMIM: 614648) RNA-binding Raly-like ( 280) 977 115.4 1.3e-25
XP_016868560 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 977 115.4 1.3e-25
XP_016868559 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 977 115.4 1.3e-25
XP_016868547 (OMIM: 614648) PREDICTED: RNA-binding ( 293) 977 115.5 1.3e-25
XP_011515764 (OMIM: 614648) PREDICTED: RNA-binding ( 227) 963 113.8 3.2e-25
XP_016868569 (OMIM: 614648) PREDICTED: RNA-binding ( 227) 963 113.8 3.2e-25
XP_016868571 (OMIM: 614648) PREDICTED: RNA-binding ( 224) 962 113.7 3.4e-25
XP_016868570 (OMIM: 614648) PREDICTED: RNA-binding ( 224) 962 113.7 3.4e-25
XP_016868564 (OMIM: 614648) PREDICTED: RNA-binding ( 237) 962 113.8 3.5e-25
XP_016876741 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 748 91.5 2.3e-18
XP_006720188 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 748 91.5 2.3e-18
XP_016876742 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 748 91.5 2.3e-18
NP_001070911 (OMIM: 164020) heterogeneous nuclear ( 293) 748 91.5 2.3e-18
NP_004491 (OMIM: 164020) heterogeneous nuclear rib ( 293) 748 91.5 2.3e-18
XP_011535014 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 748 91.5 2.3e-18
XP_016868568 (OMIM: 614648) PREDICTED: RNA-binding ( 235) 590 74.7 1.9e-13
XP_016868567 (OMIM: 614648) PREDICTED: RNA-binding ( 235) 590 74.7 1.9e-13
XP_016868565 (OMIM: 614648) PREDICTED: RNA-binding ( 235) 590 74.7 1.9e-13
XP_016868566 (OMIM: 614648) PREDICTED: RNA-binding ( 235) 590 74.7 1.9e-13
XP_016868563 (OMIM: 614648) PREDICTED: RNA-binding ( 238) 590 74.7 2e-13
XP_016868562 (OMIM: 614648) PREDICTED: RNA-binding ( 248) 590 74.8 2e-13
XP_016868561 (OMIM: 614648) PREDICTED: RNA-binding ( 251) 590 74.8 2e-13
XP_016868549 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 590 74.9 2.2e-13
XP_016868553 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 590 74.9 2.2e-13
XP_016868552 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 590 74.9 2.2e-13
XP_016868551 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 590 74.9 2.2e-13
NP_001093862 (OMIM: 614648) RNA-binding Raly-like ( 291) 590 74.9 2.2e-13
XP_016868548 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 590 74.9 2.2e-13
XP_016868554 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 590 74.9 2.2e-13
NP_776247 (OMIM: 614648) RNA-binding Raly-like pro ( 291) 590 74.9 2.2e-13
NP_001093863 (OMIM: 614648) RNA-binding Raly-like ( 291) 590 74.9 2.2e-13
XP_016868550 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 590 74.9 2.2e-13
NP_001093861 (OMIM: 614648) RNA-binding Raly-like ( 304) 590 74.9 2.2e-13
XP_011535012 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 545 70.2 5.9e-12
NP_001070910 (OMIM: 164020) heterogeneous nuclear ( 306) 545 70.2 5.9e-12
XP_011535013 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 545 70.2 5.9e-12
XP_011535011 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 545 70.2 5.9e-12
NP_112604 (OMIM: 164020) heterogeneous nuclear rib ( 306) 545 70.2 5.9e-12
XP_011535010 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 545 70.2 5.9e-12
>>XP_005260391 (OMIM: 614663) PREDICTED: RNA-binding pro (306 aa)
initn: 2002 init1: 2002 opt: 2002 Z-score: 1161.3 bits: 223.0 E(85289): 6e-58
Smith-Waterman score: 2002; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
250 260 270 280 290 300
pF1KE0 DDGALQ
::::::
XP_005 DDGALQ
>>XP_016883220 (OMIM: 614663) PREDICTED: RNA-binding pro (306 aa)
initn: 2002 init1: 2002 opt: 2002 Z-score: 1161.3 bits: 223.0 E(85289): 6e-58
Smith-Waterman score: 2002; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
250 260 270 280 290 300
pF1KE0 DDGALQ
::::::
XP_016 DDGALQ
>>NP_057951 (OMIM: 614663) RNA-binding protein Raly isof (306 aa)
initn: 2002 init1: 2002 opt: 2002 Z-score: 1161.3 bits: 223.0 E(85289): 6e-58
Smith-Waterman score: 2002; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
250 260 270 280 290 300
pF1KE0 DDGALQ
::::::
NP_057 DDGALQ
>>XP_011526997 (OMIM: 614663) PREDICTED: RNA-binding pro (306 aa)
initn: 2002 init1: 2002 opt: 2002 Z-score: 1161.3 bits: 223.0 E(85289): 6e-58
Smith-Waterman score: 2002; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
250 260 270 280 290 300
pF1KE0 DDGALQ
::::::
XP_011 DDGALQ
>>XP_011526996 (OMIM: 614663) PREDICTED: RNA-binding pro (306 aa)
initn: 2002 init1: 2002 opt: 2002 Z-score: 1161.3 bits: 223.0 E(85289): 6e-58
Smith-Waterman score: 2002; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
250 260 270 280 290 300
pF1KE0 DDGALQ
::::::
XP_011 DDGALQ
>>NP_031393 (OMIM: 614663) RNA-binding protein Raly isof (290 aa)
initn: 1867 init1: 1182 opt: 1182 Z-score: 696.8 bits: 137.0 E(85289): 4.5e-32
Smith-Waterman score: 1839; 94.8% identity (94.8% similar) in 306 aa overlap (1-306:1-290)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIY-----------
70 80 90 100
130 140 150 160 170 180
pF1KE0 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 -----RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
230 240 250 260 270 280
pF1KE0 DDGALQ
::::::
NP_031 DDGALQ
290
>>XP_005260393 (OMIM: 614663) PREDICTED: RNA-binding pro (290 aa)
initn: 1867 init1: 1182 opt: 1182 Z-score: 696.8 bits: 137.0 E(85289): 4.5e-32
Smith-Waterman score: 1839; 94.8% identity (94.8% similar) in 306 aa overlap (1-306:1-290)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIY-----------
70 80 90 100
130 140 150 160 170 180
pF1KE0 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 -----RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
230 240 250 260 270 280
pF1KE0 DDGALQ
::::::
XP_005 DDGALQ
290
>>XP_016868557 (OMIM: 614648) PREDICTED: RNA-binding Ral (280 aa)
initn: 631 init1: 607 opt: 977 Z-score: 580.8 bits: 115.4 E(85289): 1.3e-25
Smith-Waterman score: 977; 69.9% identity (85.8% similar) in 226 aa overlap (1-224:1-222)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
:. : :.::::::::::::::::::::::::.::: :.:.::::::...:::::::::::
XP_016 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDYY
:: .:::::::: :::.::.::: ::::::::::: ::: : :: ::.::::.::::::
XP_016 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYSGYVFDYDYY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 RDDFYDRLFDYRGRLSPVPVPRAV-PVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSA
:::::.:::::.::. : : :::: :.:::::.: .:: : .: .:::: ..:.
XP_016 RDDFYNRLFDYHGRVPP-P-PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA--SGST
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 KIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGG
::::.:::.:: ::::::..::.::.:::.: .:::. ...::
XP_016 GSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQEECV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 SGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDT
XP_016 SEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
240 250 260 270 280
>>XP_016868558 (OMIM: 614648) PREDICTED: RNA-binding Ral (280 aa)
initn: 631 init1: 607 opt: 977 Z-score: 580.8 bits: 115.4 E(85289): 1.3e-25
Smith-Waterman score: 977; 69.9% identity (85.8% similar) in 226 aa overlap (1-224:1-222)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
:. : :.::::::::::::::::::::::::.::: :.:.::::::...:::::::::::
XP_016 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDYY
:: .:::::::: :::.::.::: ::::::::::: ::: : :: ::.::::.::::::
XP_016 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYSGYVFDYDYY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 RDDFYDRLFDYRGRLSPVPVPRAV-PVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSA
:::::.:::::.::. : : :::: :.:::::.: .:: : .: .:::: ..:.
XP_016 RDDFYNRLFDYHGRVPP-P-PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA--SGST
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 KIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGG
::::.:::.:: ::::::..::.::.:::.: .:::. ...::
XP_016 GSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQEECV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 SGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDT
XP_016 SEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
240 250 260 270 280
>>XP_016868556 (OMIM: 614648) PREDICTED: RNA-binding Ral (280 aa)
initn: 631 init1: 607 opt: 977 Z-score: 580.8 bits: 115.4 E(85289): 1.3e-25
Smith-Waterman score: 977; 69.9% identity (85.8% similar) in 226 aa overlap (1-224:1-222)
10 20 30 40 50 60
pF1KE0 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
:. : :.::::::::::::::::::::::::.::: :.:.::::::...:::::::::::
XP_016 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDYY
:: .:::::::: :::.::.::: ::::::::::: ::: : :: ::.::::.::::::
XP_016 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYSGYVFDYDYY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 RDDFYDRLFDYRGRLSPVPVPRAV-PVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSA
:::::.:::::.::. : : :::: :.:::::.: .:: : .: .:::: ..:.
XP_016 RDDFYNRLFDYHGRVPP-P-PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA--SGST
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 KIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGG
::::.:::.:: ::::::..::.::.:::.: .:::. ...::
XP_016 GSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQEECV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 SGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDT
XP_016 SEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
240 250 260 270 280
306 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:24:12 2016 done: Sat Nov 5 18:24:14 2016
Total Scan time: 8.640 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]