Result of FASTA (ccds) for
pF1KE0728
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0728, 418 aa
1>>>pF1KE0728 418 - 418 aa - 418 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.0828+/-0.00107; mu= 1.7691+/- 0.065
mean_var=260.6565+/-54.518, 0's: 0 Z-trim(112.0): 95 B-trim: 777 in 1/50
Lambda= 0.079440
statistics sampled from 12734 (12825) to 12734 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.394), width: 16
Scan time: 3.030
The best scores are: opt bits E(32554)
CCDS10531.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 418) 2821 336.4 3e-92
CCDS45405.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 392) 2562 306.7 2.5e-83
CCDS55983.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 397) 2561 306.6 2.7e-83
CCDS10532.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 395) 2384 286.3 3.5e-77
CCDS76818.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 425) 2306 277.4 1.8e-74
CCDS55984.1 RBFOX1 gene_id:54715|Hs108|chr16 ( 370) 1496 184.5 1.4e-46
CCDS46701.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 376) 1336 166.2 4.8e-41
CCDS43013.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 451) 1245 155.8 7.6e-38
CCDS13921.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 367) 1239 155.1 1.1e-37
CCDS46700.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 380) 1226 153.6 3e-37
CCDS46699.1 RBFOX2 gene_id:23543|Hs108|chr22 ( 370) 1110 140.3 3e-33
CCDS45805.1 RBFOX3 gene_id:146713|Hs108|chr17 ( 312) 1074 136.1 4.6e-32
>>CCDS10531.1 RBFOX1 gene_id:54715|Hs108|chr16 (418 aa)
initn: 2821 init1: 2821 opt: 2821 Z-score: 1769.5 bits: 336.4 E(32554): 3e-92
Smith-Waterman score: 2821; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
310 320 330 340 350 360
370 380 390 400 410
pF1KE0 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
370 380 390 400 410
>>CCDS45405.1 RBFOX1 gene_id:54715|Hs108|chr16 (392 aa)
initn: 2645 init1: 2560 opt: 2562 Z-score: 1609.5 bits: 306.7 E(32554): 2.5e-83
Smith-Waterman score: 2597; 93.8% identity (93.8% similar) in 418 aa overlap (1-418:1-392)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
310 320 330 340 350 360
370 380 390 400 410
pF1KE0 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
:::::::::::::::::: ::::::::::::::
CCDS45 DPYHHALAPAPTYGVGAM--------------------------ASIYRGGYNRFAPY
370 380 390
>>CCDS55983.1 RBFOX1 gene_id:54715|Hs108|chr16 (397 aa)
initn: 1995 init1: 1995 opt: 2561 Z-score: 1608.8 bits: 306.6 E(32554): 2.7e-83
Smith-Waterman score: 2561; 97.4% identity (98.5% similar) in 391 aa overlap (28-418:8-397)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
..:::::::::::::::::::::::::::::::
CCDS55 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
:::::::::::::::::::::. :: . :::::::::::::::::::::::::::::
CCDS55 NTFRAAAPPPPIPAYGGVVYQDGFYGADIY-GGYAAYRYAQPTPATAAAYSDSYGRVYAA
290 300 310 320 330
370 380 390 400 410
pF1KE0 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
340 350 360 370 380 390
>>CCDS10532.1 RBFOX1 gene_id:54715|Hs108|chr16 (395 aa)
initn: 2377 init1: 2377 opt: 2384 Z-score: 1499.2 bits: 286.3 E(32554): 3.5e-77
Smith-Waterman score: 2384; 98.3% identity (98.6% similar) in 362 aa overlap (1-361:1-362)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
250 260 270 280 290 300
310 320 330 340 350
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVY-A
:::::::::::::::::::::::::::::::::::::::::::::::::::: :. :
CCDS10 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE0 ADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
::
CCDS10 ADEISCNTSAVTDEFMLPTPTTTHLLQPPPTALVP
370 380 390
>>CCDS76818.1 RBFOX1 gene_id:54715|Hs108|chr16 (425 aa)
initn: 1995 init1: 1995 opt: 2306 Z-score: 1450.4 bits: 277.4 E(32554): 1.8e-74
Smith-Waterman score: 2306; 95.6% identity (97.5% similar) in 360 aa overlap (28-386:51-409)
10 20 30 40 50
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGI
..::::::::::::::::::::::::::::
CCDS76 HSDIKADCNTCVEIEDRKVSRQQMNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGI
30 40 50 60 70 80
60 70 80 90 100 110
pF1KE0 PAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAP
90 100 110 120 130 140
120 130 140 150 160 170
pF1KE0 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG
150 160 170 180 190 200
180 190 200 210 220 230
pF1KE0 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGA
210 220 230 240 250 260
240 250 260 270 280 290
pF1KE0 VYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGR
270 280 290 300 310 320
300 310 320 330 340 350
pF1KE0 TVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRV
::::::::::::::::::::::::. :: . ::::::::::::::::::::::::::
CCDS76 TVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIY-GGYAAYRYAQPTPATAAAYSDSYGRV
330 340 350 360 370
360 370 380 390 400 410
pF1KE0 YAADPYHHALAPAPTYGVGAM-NAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFA
::::::::::::::::::::: .. .: ::
CCDS76 YAADPYHHALAPAPTYGVGAMPQGSSPSTDFRGAKLHTSRPLLSGS
380 390 400 410 420
>>CCDS55984.1 RBFOX1 gene_id:54715|Hs108|chr16 (370 aa)
initn: 2059 init1: 1461 opt: 1496 Z-score: 949.5 bits: 184.5 E(32554): 1.4e-46
Smith-Waterman score: 2322; 90.3% identity (91.6% similar) in 391 aa overlap (28-418:8-370)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
..:::::::::::::::::::::::::::::::
CCDS55 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
:::: :.:::::::::::::::::::::::::::
CCDS55 PEFY---------------------------AVPGFPYPAATAAAAYRGAHLRGRGRTVY
230 240 250
310 320 330 340 350 360
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
:::::::::::::::::::::. :: . :::::::::::::::::::::::::::::
CCDS55 NTFRAAAPPPPIPAYGGVVYQDGFYGADIY-GGYAAYRYAQPTPATAAAYSDSYGRVYAA
260 270 280 290 300 310
370 380 390 400 410
pF1KE0 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
320 330 340 350 360 370
>>CCDS46701.1 RBFOX2 gene_id:23543|Hs108|chr22 (376 aa)
initn: 1369 init1: 764 opt: 1336 Z-score: 850.3 bits: 166.2 E(32554): 4.8e-41
Smith-Waterman score: 1483; 62.7% identity (75.7% similar) in 407 aa overlap (29-418:9-376)
10 20 30 40 50
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGIPA
::::: ...::.:.::... : :: :::::.
CCDS46 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPT
10 20 30 40
60 70 80 90 100 110
pF1KE0 EYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTD
:: .:: . .:.::: ::.:.:: .:.:.::: . :.: .:. : :. .: ::
CCDS46 EYGVPHTQ---DYAGQTG--EHNLTLYGSTQAHGEQSSNSPSTQ--NGSLT-TEGGAQTD
50 60 70 80 90
120 130 140 150 160 170
pF1KE0 GQP-QTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
:: ::: :::.:.:: :::::::::::::::::::::::::::::::::::::::::::
CCDS46 GQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE0 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAV
:::::::::::::::::::::::::::::::::::::::::: :.::.:::::.::::::
CCDS46 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAV
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE0 YSPEFYAGTVLLCQANQEGSSMYSAPSS------LVYTSAMPGFPYP-AATAAAAYRGAH
:.::.::.. . ::. .. ..: : .:::::: :::.:::.::::
CCDS46 YGPELYAASSF--QADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAH
220 230 240 250 260 270
300 310 320 330 340
pF1KE0 LRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAA---
:::::::::.. ::. :: :::: :::::. :: : :::::::::::. ::::
CCDS46 LRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYGADLY-GGYAAYRYAQPATATAATAA
280 290 300 310 320
350 360 370 380 390 400
pF1KE0 -----AYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSL
::::.:::::.::::: ::::: .:::::.
CCDS46 AAAAAAYSDGYGRVYTADPYH-ALAPAASYGVGAV-------------------------
330 340 350 360
410
pF1KE0 QASIYRGGYNRFAPY
::.:::::.:::::
CCDS46 -ASLYRGGYSRFAPY
370
>>CCDS43013.1 RBFOX2 gene_id:23543|Hs108|chr22 (451 aa)
initn: 1369 init1: 764 opt: 1245 Z-score: 792.9 bits: 155.8 E(32554): 7.6e-38
Smith-Waterman score: 1504; 62.5% identity (75.7% similar) in 411 aa overlap (29-418:79-451)
10 20 30 40 50
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGI
::::: ...::.:.::... : :: ::::
CCDS43 RTEEAAADGGGGMQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGI
50 60 70 80 90 100
60 70 80 90 100 110
pF1KE0 PAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAP
:.:: .:: . .:.::: ::.:.:: .:.:.::: . :.: .:. :::. .:
CCDS43 PTEYGVPHTQ---DYAGQTG--EHNLTLYGSTQAHGEQSSNSPSTQ--NGSLTQTEGGAQ
110 120 130 140 150 160
120 130 140 150 160 170
pF1KE0 TDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK
:::: ::: :::.:.:: :::::::::::::::::::::::::::::::::::::::::
CCDS43 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK
170 180 190 200 210 220
180 190 200 210 220 230
pF1KE0 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVG
:::::::::::::::::::::::::::::::::::::::::::: :.::.:::::.::::
CCDS43 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVG
230 240 250 260 270 280
240 250 260 270 280
pF1KE0 AVYSPEFYAGTVLLCQANQEGSSMYSAPSS----------LVYTSAMPGFPYP-AATAAA
:::.::.::.. . ::. .. ..: : :. .:::::: :::.::
CCDS43 AVYGPELYAASSF--QADVSLGNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAA
290 300 310 320 330
290 300 310 320 330 340
pF1KE0 AYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPA
:.:::::::::::::.. ::. :: :::: :::::. :: : :::::::::::. :
CCDS43 AFRGAHLRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYGADLY-GGYAAYRYAQPATA
340 350 360 370 380 390
350 360 370 380 390
pF1KE0 TAA--------AYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVG
::: ::::.:::::.::::: ::::: .:::::.
CCDS43 TAATAAAAAAAAYSDGYGRVYTADPYH-ALAPAASYGVGAV-------------------
400 410 420 430
400 410
pF1KE0 LVLSSLQASIYRGGYNRFAPY
::.:::::.:::::
CCDS43 -------ASLYRGGYSRFAPY
440 450
>>CCDS13921.1 RBFOX2 gene_id:23543|Hs108|chr22 (367 aa)
initn: 1232 init1: 764 opt: 1239 Z-score: 790.4 bits: 155.1 E(32554): 1.1e-37
Smith-Waterman score: 1239; 62.7% identity (78.2% similar) in 330 aa overlap (29-349:9-328)
10 20 30 40 50
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGIPA
::::: ...::.:.::... : :: :::::.
CCDS13 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPT
10 20 30 40
60 70 80 90 100 110
pF1KE0 EYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTD
:: .:: . .:.::: ::.:.:: .:.:.::: . :.: .:. :::. .: ::
CCDS13 EYGVPHTQ---DYAGQT--GEHNLTLYGSTQAHGEQSSNSPSTQ--NGSLTQTEGGAQTD
50 60 70 80 90
120 130 140 150 160 170
pF1KE0 GQP-QTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
:: ::: :::.:.:: :::::::::::::::::::::::::::::::::::::::::::
CCDS13 GQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE0 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAV
:::::::::::::::::::::::::::::::::::::::::: :.::.:::::.::::::
CCDS13 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAV
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE0 YSPEFYAGTVLLCQANQEGSSMYSAPSS------LVYTSAMPGFPYP-AATAAAAYRGAH
:.::.::.. . ::. .. ..: : .:::::: :::.:::.::::
CCDS13 YGPELYAASSF--QADVSLGNDAAVPLSGRGGINTYIPLIIPGFPYPTAATTAAAFRGAH
220 230 240 250 260 270
300 310 320 330 340 350
pF1KE0 LRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYS
:::::::::.. ::. :: :::: :: .: . . ::: . :: .:. :
CCDS13 LRGRGRTVYGAVRAV-PPTAIPAYPGVDMQPTDMHSLLLQPQPPLLQPLQPLTVTVMAGC
280 290 300 310 320 330
360 370 380 390 400 410
pF1KE0 DSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGG
CCDS13 TQPTPTMPLPLPLAMELALWRVYTEVATADLPPTEVT
340 350 360
>>CCDS46700.1 RBFOX2 gene_id:23543|Hs108|chr22 (380 aa)
initn: 1369 init1: 764 opt: 1226 Z-score: 782.1 bits: 153.6 E(32554): 3e-37
Smith-Waterman score: 1485; 62.3% identity (75.4% similar) in 411 aa overlap (29-418:9-380)
10 20 30 40 50
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPP-QNGIPA
::::: ...::.:.::... : :: :::::.
CCDS46 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPT
10 20 30 40
60 70 80 90 100 110
pF1KE0 EYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTD
:: .:: . .:.::: ::.:.:: .:.:.::: . :.: .:. : :. .: ::
CCDS46 EYGVPHTQ---DYAGQTG--EHNLTLYGSTQAHGEQSSNSPSTQ--NGSLT-TEGGAQTD
50 60 70 80 90
120 130 140 150 160 170
pF1KE0 GQP-QTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
:: ::: :::.:.:: :::::::::::::::::::::::::::::::::::::::::::
CCDS46 GQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE0 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAV
:::::::::::::::::::::::::::::::::::::::::: :.::.:::::.::::::
CCDS46 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAV
160 170 180 190 200 210
240 250 260 270 280
pF1KE0 YSPEFYAGTVLLCQANQEGSSMYSAPSS----------LVYTSAMPGFPYP-AATAAAAY
:.::.::.. . ::. .. ..: : :. .:::::: :::.:::.
CCDS46 YGPELYAASSF--QADVSLGNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAF
220 230 240 250 260 270
290 300 310 320 330 340
pF1KE0 RGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATA
:::::::::::::.. ::. :: :::: :::::. :: : :::::::::::. :::
CCDS46 RGAHLRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYGADLY-GGYAAYRYAQPATATA
280 290 300 310 320
350 360 370 380 390
pF1KE0 A--------AYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLV
: ::::.:::::.::::: ::::: .:::::.
CCDS46 ATAAAAAAAAYSDGYGRVYTADPYH-ALAPAASYGVGAV---------------------
330 340 350 360
400 410
pF1KE0 LSSLQASIYRGGYNRFAPY
::.:::::.:::::
CCDS46 -----ASLYRGGYSRFAPY
370 380
418 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:01:24 2016 done: Sat Nov 5 18:01:24 2016
Total Scan time: 3.030 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]