Result of FASTA (omim) for
pF1KE0728
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0728, 418 aa
1>>>pF1KE0728 418 - 418 aa - 418 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3143+/-0.00049; mu= 6.9183+/- 0.031
mean_var=329.7498+/-68.194, 0's: 0 Z-trim(119.6): 189 B-trim: 2023 in 1/58
Lambda= 0.070629
statistics sampled from 33556 (33775) to 33556 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.396), width: 16
Scan time: 8.330
The best scores are: opt bits E(85289)
NP_665898 (OMIM: 605104) RNA binding protein fox-1 ( 418) 2821 301.2 3.2e-81
XP_011520848 (OMIM: 605104) PREDICTED: RNA binding ( 417) 2756 294.6 3.1e-79
XP_016878816 (OMIM: 605104) PREDICTED: RNA binding ( 422) 2567 275.3 2e-73
NP_665899 (OMIM: 605104) RNA binding protein fox-1 ( 392) 2562 274.8 2.7e-73
NP_061193 (OMIM: 605104) RNA binding protein fox-1 ( 397) 2561 274.7 2.9e-73
NP_001135806 (OMIM: 605104) RNA binding protein fo ( 397) 2561 274.7 2.9e-73
XP_016878822 (OMIM: 605104) PREDICTED: RNA binding ( 397) 2561 274.7 2.9e-73
XP_016878813 (OMIM: 605104) PREDICTED: RNA binding ( 440) 2561 274.8 3.1e-73
NP_665900 (OMIM: 605104) RNA binding protein fox-1 ( 395) 2384 256.7 7.7e-68
XP_005255444 (OMIM: 605104) PREDICTED: RNA binding ( 444) 2384 256.7 8.3e-68
XP_011520849 (OMIM: 605104) PREDICTED: RNA binding ( 394) 2319 250.0 7.6e-66
NP_001295046 (OMIM: 605104) RNA binding protein fo ( 425) 2306 248.7 2e-65
XP_005255443 (OMIM: 605104) PREDICTED: RNA binding ( 449) 2195 237.5 5.2e-62
XP_005255445 (OMIM: 605104) PREDICTED: RNA binding ( 426) 2193 237.2 5.8e-62
XP_005255447 (OMIM: 605104) PREDICTED: RNA binding ( 424) 2189 236.8 7.7e-62
XP_016878814 (OMIM: 605104) PREDICTED: RNA binding ( 424) 2189 236.8 7.7e-62
XP_005255448 (OMIM: 605104) PREDICTED: RNA binding ( 424) 2189 236.8 7.7e-62
XP_016878810 (OMIM: 605104) PREDICTED: RNA binding ( 460) 2189 236.9 8.1e-62
XP_016878809 (OMIM: 605104) PREDICTED: RNA binding ( 467) 2189 236.9 8.2e-62
XP_016878807 (OMIM: 605104) PREDICTED: RNA binding ( 623) 2189 237.1 9.7e-62
XP_016878821 (OMIM: 605104) PREDICTED: RNA binding ( 399) 2130 230.8 4.8e-60
XP_016878812 (OMIM: 605104) PREDICTED: RNA binding ( 448) 2130 230.8 5.2e-60
XP_016878828 (OMIM: 605104) PREDICTED: RNA binding ( 376) 2128 230.5 5.4e-60
XP_016878824 (OMIM: 605104) PREDICTED: RNA binding ( 374) 2124 230.1 7.1e-60
XP_016878825 (OMIM: 605104) PREDICTED: RNA binding ( 374) 2124 230.1 7.1e-60
XP_016878819 (OMIM: 605104) PREDICTED: RNA binding ( 410) 2124 230.2 7.5e-60
XP_016878817 (OMIM: 605104) PREDICTED: RNA binding ( 417) 2124 230.2 7.5e-60
XP_016878815 (OMIM: 605104) PREDICTED: RNA binding ( 423) 2124 230.2 7.6e-60
XP_016878811 (OMIM: 605104) PREDICTED: RNA binding ( 459) 2124 230.2 8e-60
XP_016878820 (OMIM: 605104) PREDICTED: RNA binding ( 404) 2115 229.3 1.4e-59
XP_005255451 (OMIM: 605104) PREDICTED: RNA binding ( 391) 1689 185.8 1.6e-46
XP_011520850 (OMIM: 605104) PREDICTED: RNA binding ( 367) 1678 184.7 3.4e-46
XP_016878823 (OMIM: 605104) PREDICTED: RNA binding ( 395) 1502 166.8 8.8e-41
NP_001135805 (OMIM: 605104) RNA binding protein fo ( 370) 1496 166.1 1.3e-40
XP_016878827 (OMIM: 605104) PREDICTED: RNA binding ( 370) 1496 166.1 1.3e-40
XP_016878818 (OMIM: 605104) PREDICTED: RNA binding ( 413) 1496 166.2 1.4e-40
XP_016878808 (OMIM: 605104) PREDICTED: RNA binding ( 569) 1496 166.4 1.7e-40
XP_016878826 (OMIM: 605104) PREDICTED: RNA binding ( 372) 1489 165.4 2.1e-40
XP_016878832 (OMIM: 605104) PREDICTED: RNA binding ( 349) 1487 165.2 2.4e-40
XP_016878831 (OMIM: 605104) PREDICTED: RNA binding ( 347) 1483 164.8 3.1e-40
XP_016878830 (OMIM: 605104) PREDICTED: RNA binding ( 347) 1483 164.8 3.1e-40
XP_005261487 (OMIM: 612149) PREDICTED: RNA binding ( 448) 1369 153.3 1.1e-36
XP_016884185 (OMIM: 612149) PREDICTED: RNA binding ( 377) 1355 151.8 2.8e-36
XP_005261488 (OMIM: 612149) PREDICTED: RNA binding ( 447) 1355 151.9 3e-36
NP_001076045 (OMIM: 612149) RNA binding protein fo ( 376) 1336 149.8 1.1e-35
XP_016884181 (OMIM: 612149) PREDICTED: RNA binding ( 398) 1336 149.9 1.1e-35
XP_005261489 (OMIM: 612149) PREDICTED: RNA binding ( 446) 1336 149.9 1.2e-35
XP_016884182 (OMIM: 612149) PREDICTED: RNA binding ( 391) 1259 142.0 2.5e-33
XP_006724250 (OMIM: 612149) PREDICTED: RNA binding ( 452) 1259 142.1 2.7e-33
XP_005261485 (OMIM: 612149) PREDICTED: RNA binding ( 461) 1259 142.1 2.7e-33
>>NP_665898 (OMIM: 605104) RNA binding protein fox-1 hom (418 aa)
initn: 2821 init1: 2821 opt: 2821 Z-score: 1579.3 bits: 301.2 E(85289): 3.2e-81
Smith-Waterman score: 2821; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
310 320 330 340 350 360
370 380 390 400 410
pF1KE0 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
370 380 390 400 410
>>XP_011520848 (OMIM: 605104) PREDICTED: RNA binding pro (417 aa)
initn: 2190 init1: 2190 opt: 2756 Z-score: 1543.5 bits: 294.6 E(85289): 3.1e-79
Smith-Waterman score: 2756; 98.1% identity (98.6% similar) in 418 aa overlap (1-418:1-417)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
:::::::::::::::::::::. :: . :::::::::::::::::::::::::::::
XP_011 NTFRAAAPPPPIPAYGGVVYQDGFYGADIY-GGYAAYRYAQPTPATAAAYSDSYGRVYAA
310 320 330 340 350
370 380 390 400 410
pF1KE0 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
360 370 380 390 400 410
>>XP_016878816 (OMIM: 605104) PREDICTED: RNA binding pro (422 aa)
initn: 2001 init1: 2001 opt: 2567 Z-score: 1439.4 bits: 275.3 E(85289): 2e-73
Smith-Waterman score: 2567; 97.7% identity (98.2% similar) in 392 aa overlap (27-418:32-422)
10 20 30 40 50
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNG
: ::::::::::::::::::::::::::::
XP_016 MQHPLTGATCVALPNVGMCPQLSCALTFMYLQQGNQEAAAAPDTMAQPYASAQFAPPQNG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 IPAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IPAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 PTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVG
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 AVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE0 RTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGR
:::::::::::::::::::::::::. :: . :::::::::::::::::::::::::
XP_016 RTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIY-GGYAAYRYAQPTPATAAAYSDSYGR
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE0 VYAADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYAADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFA
370 380 390 400 410 420
pF1KE0 PY
::
XP_016 PY
>>NP_665899 (OMIM: 605104) RNA binding protein fox-1 hom (392 aa)
initn: 2645 init1: 2560 opt: 2562 Z-score: 1436.9 bits: 274.8 E(85289): 2.7e-73
Smith-Waterman score: 2597; 93.8% identity (93.8% similar) in 418 aa overlap (1-418:1-392)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
310 320 330 340 350 360
370 380 390 400 410
pF1KE0 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
:::::::::::::::::: ::::::::::::::
NP_665 DPYHHALAPAPTYGVGAM--------------------------ASIYRGGYNRFAPY
370 380 390
>>NP_061193 (OMIM: 605104) RNA binding protein fox-1 hom (397 aa)
initn: 1995 init1: 1995 opt: 2561 Z-score: 1436.3 bits: 274.7 E(85289): 2.9e-73
Smith-Waterman score: 2561; 97.4% identity (98.5% similar) in 391 aa overlap (28-418:8-397)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
..:::::::::::::::::::::::::::::::
NP_061 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
:::::::::::::::::::::. :: . :::::::::::::::::::::::::::::
NP_061 NTFRAAAPPPPIPAYGGVVYQDGFYGADIY-GGYAAYRYAQPTPATAAAYSDSYGRVYAA
290 300 310 320 330
370 380 390 400 410
pF1KE0 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
340 350 360 370 380 390
>>NP_001135806 (OMIM: 605104) RNA binding protein fox-1 (397 aa)
initn: 1995 init1: 1995 opt: 2561 Z-score: 1436.3 bits: 274.7 E(85289): 2.9e-73
Smith-Waterman score: 2561; 97.4% identity (98.5% similar) in 391 aa overlap (28-418:8-397)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
..:::::::::::::::::::::::::::::::
NP_001 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
:::::::::::::::::::::. :: . :::::::::::::::::::::::::::::
NP_001 NTFRAAAPPPPIPAYGGVVYQDGFYGADIY-GGYAAYRYAQPTPATAAAYSDSYGRVYAA
290 300 310 320 330
370 380 390 400 410
pF1KE0 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
340 350 360 370 380 390
>>XP_016878822 (OMIM: 605104) PREDICTED: RNA binding pro (397 aa)
initn: 1995 init1: 1995 opt: 2561 Z-score: 1436.3 bits: 274.7 E(85289): 2.9e-73
Smith-Waterman score: 2561; 97.4% identity (98.5% similar) in 391 aa overlap (28-418:8-397)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
..:::::::::::::::::::::::::::::::
XP_016 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
:::::::::::::::::::::. :: . :::::::::::::::::::::::::::::
XP_016 NTFRAAAPPPPIPAYGGVVYQDGFYGADIY-GGYAAYRYAQPTPATAAAYSDSYGRVYAA
290 300 310 320 330
370 380 390 400 410
pF1KE0 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
340 350 360 370 380 390
>>XP_016878813 (OMIM: 605104) PREDICTED: RNA binding pro (440 aa)
initn: 1995 init1: 1995 opt: 2561 Z-score: 1435.9 bits: 274.8 E(85289): 3.1e-73
Smith-Waterman score: 2561; 97.4% identity (98.5% similar) in 391 aa overlap (28-418:51-440)
10 20 30 40 50
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGI
..::::::::::::::::::::::::::::
XP_016 HSDIKADCNTCVEIEDRKVSRQQMNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGI
30 40 50 60 70 80
60 70 80 90 100 110
pF1KE0 PAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAP
90 100 110 120 130 140
120 130 140 150 160 170
pF1KE0 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG
150 160 170 180 190 200
180 190 200 210 220 230
pF1KE0 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGA
210 220 230 240 250 260
240 250 260 270 280 290
pF1KE0 VYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGR
270 280 290 300 310 320
300 310 320 330 340 350
pF1KE0 TVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRV
::::::::::::::::::::::::. :: . ::::::::::::::::::::::::::
XP_016 TVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIY-GGYAAYRYAQPTPATAAAYSDSYGRV
330 340 350 360 370
360 370 380 390 400 410
pF1KE0 YAADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YAADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAP
380 390 400 410 420 430
pF1KE0 Y
:
XP_016 Y
440
>>NP_665900 (OMIM: 605104) RNA binding protein fox-1 hom (395 aa)
initn: 2377 init1: 2377 opt: 2384 Z-score: 1338.9 bits: 256.7 E(85289): 7.7e-68
Smith-Waterman score: 2384; 98.3% identity (98.6% similar) in 362 aa overlap (1-361:1-362)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
250 260 270 280 290 300
310 320 330 340 350
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVY-A
:::::::::::::::::::::::::::::::::::::::::::::::::::: :. :
NP_665 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE0 ADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
::
NP_665 ADEISCNTSAVTDEFMLPTPTTTHLLQPPPTALVP
370 380 390
>>XP_005255444 (OMIM: 605104) PREDICTED: RNA binding pro (444 aa)
initn: 2377 init1: 2377 opt: 2384 Z-score: 1338.3 bits: 256.7 E(85289): 8.3e-68
Smith-Waterman score: 2384; 98.3% identity (98.6% similar) in 362 aa overlap (1-361:1-362)
10 20 30 40 50 60
pF1KE0 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
250 260 270 280 290 300
310 320 330 340 350
pF1KE0 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVY-A
:::::::::::::::::::::::::::::::::::::::::::::::::::: :. :
XP_005 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE0 ADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
::
XP_005 ADEISCNTSAVTDEFMLPTPTTTHLLQPPPTALVPCPKVPAPAQTSEELSCTLPGLCCQA
370 380 390 400 410 420
418 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:01:25 2016 done: Sat Nov 5 18:01:26 2016
Total Scan time: 8.330 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]