FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0745, 320 aa
  1>>>pF1KE0745 320 - 320 aa - 320 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7417+/-0.000729; mu= 16.3768+/- 0.045
 mean_var=126.3426+/-26.448, 0's: 0 Z-trim(113.1): 135  B-trim: 684 in 1/51
 Lambda= 0.114104
 statistics sampled from 13576 (13751) to 13576 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.422), width:  16
 Scan time:  2.960

The best scores are:                                      opt bits E(32554)
CCDS12227.1 EIF3G gene_id:8666|Hs108|chr19         ( 320) 2153 365.0 4.5e-101


>>CCDS12227.1 EIF3G gene_id:8666|Hs108|chr19              (320 aa)
 initn: 2153 init1: 2153 opt: 2153  Z-score: 1928.1  bits: 365.0 E(32554): 4.5e-101
Smith-Waterman score: 2153; 100.0% identity (100.0% similar) in 320 aa overlap (1-320:1-320)

               10        20        30        40        50        60
pF1KE0 MPTGDFDSKPSWADQVEEEGEDDKCVTSELLKGIPLATGDTSPEPELLPGAPLPPPKEVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPTGDFDSKPSWADQVEEEGEDDKCVTSELLKGIPLATGDTSPEPELLPGAPLPPPKEVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDTLGPMQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDTLGPMQK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV
              250       260       270       280       290       300

              310       320
pF1KE0 SGFGYDHLILNVEWAKPSTN
       ::::::::::::::::::::
CCDS12 SGFGYDHLILNVEWAKPSTN
              310       320




320 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:26:39 2016 done: Sat Nov  5 18:26:40 2016
 Total Scan time:  2.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]