FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0745, 320 aa
  1>>>pF1KE0745 320 - 320 aa - 320 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7590+/-0.000326; mu= 23.3668+/- 0.021
 mean_var=191.4530+/-44.917, 0's: 0 Z-trim(120.5): 147  B-trim: 2207 in 1/56
 Lambda= 0.092692
 statistics sampled from 35567 (35863) to 35567 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.42), width:  16
 Scan time:  8.390

The best scores are:                                      opt bits E(85289)
NP_003746 (OMIM: 603913) eukaryotic translation in ( 320) 2153 299.8 4.8e-81


>>NP_003746 (OMIM: 603913) eukaryotic translation initia  (320 aa)
 initn: 2153 init1: 2153 opt: 2153  Z-score: 1576.0  bits: 299.8 E(85289): 4.8e-81
Smith-Waterman score: 2153; 100.0% identity (100.0% similar) in 320 aa overlap (1-320:1-320)

               10        20        30        40        50        60
pF1KE0 MPTGDFDSKPSWADQVEEEGEDDKCVTSELLKGIPLATGDTSPEPELLPGAPLPPPKEVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPTGDFDSKPSWADQVEEEGEDDKCVTSELLKGIPLATGDTSPEPELLPGAPLPPPKEVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDTLGPMQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDTLGPMQK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV
              250       260       270       280       290       300

              310       320
pF1KE0 SGFGYDHLILNVEWAKPSTN
       ::::::::::::::::::::
NP_003 SGFGYDHLILNVEWAKPSTN
              310       320




320 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:26:40 2016 done: Sat Nov  5 18:26:41 2016
 Total Scan time:  8.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]