Result of FASTA (ccds) for
pF1KE0751
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0751, 328 aa
1>>>pF1KE0751 328 - 328 aa - 328 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0219+/-0.00106; mu= 5.9752+/- 0.064
mean_var=257.5194+/-55.242, 0's: 0 Z-trim(112.5): 96 B-trim: 108 in 1/51
Lambda= 0.079923
statistics sampled from 13183 (13278) to 13183 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.408), width: 16
Scan time: 2.800
The best scores are: opt bits E(32554)
CCDS11596.1 MSI2 gene_id:124540|Hs108|chr17 ( 328) 2266 274.1 1.1e-73
CCDS82168.1 MSI2 gene_id:124540|Hs108|chr17 ( 324) 1695 208.2 7.2e-54
CCDS11597.1 MSI2 gene_id:124540|Hs108|chr17 ( 251) 1533 189.4 2.6e-48
CCDS9196.1 MSI1 gene_id:4440|Hs108|chr12 ( 362) 1319 164.9 8.7e-41
CCDS34309.1 HNRNPAB gene_id:3182|Hs108|chr5 ( 332) 669 89.9 3e-18
CCDS34310.1 HNRNPAB gene_id:3182|Hs108|chr5 ( 285) 633 85.7 4.8e-17
CCDS3593.1 HNRNPDL gene_id:9987|Hs108|chr4 ( 420) 623 84.8 1.4e-16
CCDS82536.1 HNRNPA3 gene_id:220988|Hs108|chr2 ( 356) 600 82.0 7.8e-16
CCDS2273.1 HNRNPA3 gene_id:220988|Hs108|chr2 ( 378) 600 82.1 8.1e-16
CCDS3591.1 HNRNPD gene_id:3184|Hs108|chr4 ( 336) 598 81.8 8.8e-16
CCDS75153.1 HNRNPDL gene_id:9987|Hs108|chr4 ( 363) 595 81.5 1.2e-15
CCDS5397.1 HNRNPA2B1 gene_id:3181|Hs108|chr7 ( 341) 591 81.0 1.5e-15
CCDS43557.1 HNRNPA2B1 gene_id:3181|Hs108|chr7 ( 353) 591 81.0 1.6e-15
CCDS44909.1 HNRNPA1 gene_id:3178|Hs108|chr12 ( 372) 583 80.1 3.1e-15
CCDS3592.1 HNRNPD gene_id:3184|Hs108|chr4 ( 355) 574 79.0 6.2e-15
CCDS31980.1 HNRNPA1L2 gene_id:144983|Hs108|chr13 ( 320) 565 77.9 1.2e-14
CCDS41793.1 HNRNPA1 gene_id:3178|Hs108|chr12 ( 320) 562 77.6 1.5e-14
CCDS3590.1 HNRNPD gene_id:3184|Hs108|chr4 ( 306) 552 76.4 3.3e-14
CCDS4193.1 HNRNPA0 gene_id:10949|Hs108|chr5 ( 305) 531 74.0 1.7e-13
>>CCDS11596.1 MSI2 gene_id:124540|Hs108|chr17 (328 aa)
initn: 2266 init1: 2266 opt: 2266 Z-score: 1436.4 bits: 274.1 E(32554): 1.1e-73
Smith-Waterman score: 2266; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 FPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYIS
250 260 270 280 290 300
310 320
pF1KE0 AASPQPGSGFGHGIAGPLIATAFTNGYH
::::::::::::::::::::::::::::
CCDS11 AASPQPGSGFGHGIAGPLIATAFTNGYH
310 320
>>CCDS82168.1 MSI2 gene_id:124540|Hs108|chr17 (324 aa)
initn: 1734 init1: 1656 opt: 1695 Z-score: 1080.6 bits: 208.2 E(32554): 7.2e-54
Smith-Waterman score: 2070; 94.4% identity (94.4% similar) in 324 aa overlap (23-328:1-324)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
::::::::::::::::::::::::::::::::::::::
CCDS82 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
10 20 30
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
160 170 180 190 200 210
250 260 270 280
pF1KE0 FPGFPAAAYGPVAAAAVAAARGS------------------GSNPARPGGFPGANSPGPV
::::::::::::::::::::::: :::::::::::::::::::
CCDS82 FPGFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPASPAGSNPARPGGFPGANSPGPV
220 230 240 250 260 270
290 300 310 320
pF1KE0 ADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH
::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH
280 290 300 310 320
>>CCDS11597.1 MSI2 gene_id:124540|Hs108|chr17 (251 aa)
initn: 1755 init1: 1533 opt: 1533 Z-score: 980.9 bits: 189.4 E(32554): 2.6e-48
Smith-Waterman score: 1533; 99.1% identity (99.6% similar) in 223 aa overlap (22-244:18-240)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
:::::::::::::::::::::::::::::::::::::::
CCDS11 MADLTSVLTSVMFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE0 FPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYIS
:: .
CCDS11 FPDYLPVSQDIIFIN
240 250
>>CCDS9196.1 MSI1 gene_id:4440|Hs108|chr12 (362 aa)
initn: 1614 init1: 1080 opt: 1319 Z-score: 845.8 bits: 164.9 E(32554): 8.7e-41
Smith-Waterman score: 1607; 69.7% identity (83.1% similar) in 360 aa overlap (1-325:1-359)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
::... : .: :: ::: :::::::::::. ..::.::..:::..::.::::: :::
CCDS91 METDAPQPGLASP-DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::: : :.:::::.: .:::::::::::::::::::::::::::::::::::.:
CCDS91 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
:.::::::::::::::.::::::::::::::::::::::.::.:::::::::::::::::
CCDS91 TTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV
120 130 140 150 160 170
190 200 210 220 230
pF1KE0 ECKKAQPKEVMFPPGT-RGRARGLPYTMDAFMLGMGMLGYPNFVAT-YG-RGYPGFAPSY
::::::::::: : :. :::.: .:: :::::::.::::::.: :: :. :.: :.::.:
CCDS91 ECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY
180 190 200 210 220 230
240 250 260
pF1KE0 GYQFPGF-------------------PAAAYGPVAAAAVAAA--RGSGSNP---------
:::: : : .::::.::::.::: ::.::.:
CCDS91 TYQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGS
240 250 260 270 280 290
270 280 290 300 310 320
pF1KE0 --ARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTN
.: ::: :..::::.:.::: :.:::::..::::::: :..::::...::::::::::
CCDS91 TPSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTN
300 310 320 330 340 350
pF1KE0 GYH
CCDS91 GYH
360
>>CCDS34309.1 HNRNPAB gene_id:3182|Hs108|chr5 (332 aa)
initn: 651 init1: 389 opt: 669 Z-score: 441.1 bits: 89.9 E(32554): 3e-18
Smith-Waterman score: 669; 43.5% identity (68.1% similar) in 260 aa overlap (4-251:53-305)
10 20 30
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTS
::..: . .:. ...: ::::.:::::.::
CCDS34 VPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTS
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE0 PDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDP
.:.:::.::::. .: . ::.: :::::::. : : :::.::: : .:.::...:::
CCDS34 KKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE0 KVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGF
: :. . .: .::::::::. ... : ...:: .::..: : .: :..:::
CCDS34 KKAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGF
150 160 170 180 190
160 170 180 190 200
pF1KE0 GFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM----FPPGTRG-RARGLPYTMD
:.::..:. :.:: : .:: .... : : ::::::. . : :: : ::
CCDS34 VFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRG-NRGSG
200 210 220 230 240 250
210 220 230 240 250 260
pF1KE0 AFMLGMGM-----LGYPNFVATYGRGYP-GFAPSYG-YQFPGFPAAAYGPVAAAAVAAAR
. : :. :: :. . : :: :..:.:: :.. . .:::
CCDS34 GGGGGGGQSQSWNQGYGNYW-NQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTN
260 270 280 290 300 310
270 280 290 300 310 320
pF1KE0 GSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIAT
CCDS34 YGKSQRRGGHQNNYKPY
320 330
>>CCDS34310.1 HNRNPAB gene_id:3182|Hs108|chr5 (285 aa)
initn: 624 init1: 389 opt: 633 Z-score: 419.5 bits: 85.7 E(32554): 4.8e-17
Smith-Waterman score: 633; 44.6% identity (69.3% similar) in 231 aa overlap (4-229:53-276)
10 20 30
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTS
::..: . .:. ...: ::::.:::::.::
CCDS34 VPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTS
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE0 PDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDP
.:.:::.::::. .: . ::.: :::::::. : : :::.::: : .:.::...:::
CCDS34 KKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE0 KVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGF
: :. . .: .::::::::. ... : ...:: .::..: : .: :..:::
CCDS34 KKAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGF
150 160 170 180 190
160 170 180 190 200
pF1KE0 GFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM----FPPGTRG-RARGLPYTMD
:.::..:. :.:: : .:: .... : : ::::::. . : :: : :: .
CCDS34 VFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGG
200 210 220 230 240 250
210 220 230 240 250 260
pF1KE0 AFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPA
. : : : :. . ::
CCDS34 GG--GGGGQGSTNYGKSQRRGGHQNNYKPY
260 270 280
>>CCDS3593.1 HNRNPDL gene_id:9987|Hs108|chr4 (420 aa)
initn: 675 init1: 327 opt: 623 Z-score: 411.3 bits: 84.8 E(32554): 1.4e-16
Smith-Waterman score: 652; 39.7% identity (63.0% similar) in 292 aa overlap (6-281:133-419)
10 20 30
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPD
..:.. .:. .:.: ::::::::::.::
CCDS35 AATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKK
110 120 130 140 150 160
40 50 60 70 80 90
pF1KE0 SLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKV
.: .:.:.:::. .: . ::.: :::::::: : : ::::::: .:.::.: ::::
CCDS35 DLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR
170 180 190 200 210 220
100 110 120 130 140 150
pF1KE0 AFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGF
: ... ::.:::::: .: :..:.:: ::..:. : .: ::..::: :
CCDS35 AKALKGKEP----PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCF
230 240 250 260 270
160 170 180 190
pF1KE0 VTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP----------------GTRGR
.:. .:. :.:. : ..:.:.. : : ::::::. :::::
CCDS35 ITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGR
280 290 300 310 320 330
200 210 220 230 240 250
pF1KE0 ARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAA
.:: . . . .. :: :. ..:: : ... ::.. :. . :: . : .
CCDS35 GRGQGQNWNQGFNNYYDQGYGNYNSAYG-GDQNYSGYGGYDYTGYNYGNYGYGQGYADYS
340 350 360 370 380 390
260 270 280 290 300 310
pF1KE0 ARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLI
.. : . : :: :. :
CCDS35 GQQSTYGKASRGGGNHQNNYQPY
400 410 420
>>CCDS82536.1 HNRNPA3 gene_id:220988|Hs108|chr2 (356 aa)
initn: 556 init1: 287 opt: 600 Z-score: 397.8 bits: 82.0 E(32554): 7.8e-16
Smith-Waterman score: 600; 36.8% identity (63.9% similar) in 310 aa overlap (18-316:4-302)
10 20 30 40 50
pF1KE0 MEANGSQGTSGSANDSQHDPG------KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMR
::: :.::::::..:. ::::..: :.: . .:.:::
CCDS82 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMR
10 20 30 40
60 70 80 90 100 110
pF1KE0 DPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKI
:: :::::::::::.. :: .. :..:.....:: : :. ..: .:::
CCDS82 DPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 FVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHF
::::.. .: ....:::..::.: .: :. ....:::.::::...:.:.:. ..
CCDS82 FVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKY
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE0 HEINNKMVECKKAQPKEVMFPPGT-RGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYP
: ::.. : ::: :. : :. :::. : :: : .: . ...:::
CCDS82 HTINGHNCEVKKALSKQEMQSAGSQRGRGGG----SGNFMGRGGNFGGGG--GNFGRG-G
170 180 190 200 210
240 250 260 270 280
pF1KE0 GFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPA--
.:. :: : ... : ... .. : :.. . :: :: .: : . ::.
CCDS82 NFGGRGGY--GGGGGGSRGSYGGGD-GGYNGFGGDGGNYGGGPGYSSRGGYGG-GGPGYG
220 230 240 250 260 270
290 300 310 320
pF1KE0 SQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH
.: .: :. . . . :..:: : :
CCDS82 NQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSG
280 290 300 310 320 330
>>CCDS2273.1 HNRNPA3 gene_id:220988|Hs108|chr2 (378 aa)
initn: 556 init1: 287 opt: 600 Z-score: 397.5 bits: 82.1 E(32554): 8.1e-16
Smith-Waterman score: 600; 36.8% identity (63.9% similar) in 310 aa overlap (18-316:26-324)
10 20 30 40
pF1KE0 MEANGSQGTSGSANDSQHDPG------KMFIGGLSWQTSPDSLRDYFSKFGE
::: :.::::::..:. ::::..: :.:
CCDS22 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 IRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPK
. .:.::::: :::::::::::.. :: .. :..:.....:: : :. ..:
CCDS22 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE0 MVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVV
.:::::::.. .: ....:::..::.: .: :. ....:::.::::...:.:
CCDS22 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE0 EKVCEIHFHEINNKMVECKKAQPKEVMFPPGT-RGRARGLPYTMDAFMLGMGMLGYPNFV
.:. ..: ::.. : ::: :. : :. :::. : :: : .: .
CCDS22 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGG----SGNFMGRGGNFGGGG--
190 200 210 220 230
230 240 250 260 270 280
pF1KE0 ATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVA
...::: .:. :: : ... : ... .. : :.. . :: :: .: : .
CCDS22 GNFGRG-GNFGGRGGY--GGGGGGSRGSYGGGD-GGYNGFGGDGGNYGGGPGYSSRGGYG
240 250 260 270 280 290
290 300 310 320
pF1KE0 DLYGPA--SQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH
::. .: .: :. . . . :..:: : :
CCDS22 G-GGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGG
300 310 320 330 340
CCDS22 SFGGRSSGSPYGGGYGSGGGSGGYGSRRF
350 360 370
>>CCDS3591.1 HNRNPD gene_id:3184|Hs108|chr4 (336 aa)
initn: 599 init1: 356 opt: 598 Z-score: 396.8 bits: 81.8 E(32554): 8.8e-16
Smith-Waterman score: 603; 40.1% identity (63.4% similar) in 284 aa overlap (6-270:63-335)
10 20 30
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPD
:.:.. .:. ...: ::::::::::.:.
CCDS35 ATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKK
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE0 SLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKV
.:.::::::::. .: . :: : :::::::: : . :::::. : .:.:..:.::::
CCDS35 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKR
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE0 AFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGF
: ... . ::::::::: .: : ...:: ::.::. : .:. ::..::: :
CCDS35 AKAMKTKEPV----KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCF
160 170 180 190 200
160 170 180 190 200
pF1KE0 VTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP---GTRG----RARGL---P-
.::..:. :.:. : ..:... . : : :. :: . :.:: :::: :
CCDS35 ITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPS
210 220 230 240 250 260
210 220 230 240 250
pF1KE0 ------YTMDAFMLGMGMLGYPN--FVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAA
:. . . :.: :: . . . : : :. ::: . ..:: :.
CCDS35 QNWNQGYS-NYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSR--
270 280 290 300 310 320
260 270 280 290 300 310
pF1KE0 VAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQPGSGFGHGIAG
::. .: .:
CCDS35 ----RGGHQNSYKPY
330
328 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:18:40 2016 done: Sat Nov 5 04:18:41 2016
Total Scan time: 2.800 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]