FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0753, 338 aa
  1>>>pF1KE0753 338 - 338 aa - 338 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9795+/-0.00162; mu= -7.6015+/- 0.092
 mean_var=347.9341+/-81.047, 0's: 0 Z-trim(105.4): 312  B-trim: 103 in 1/49
 Lambda= 0.068758
 statistics sampled from 8067 (8408) to 8067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.258), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS53890.1 TSSK4 gene_id:283629|Hs108|chr14       ( 338) 2246 237.4 1.3e-62
CCDS76662.1 TSSK4 gene_id:283629|Hs108|chr14       ( 252) 1238 137.3 1.3e-32
CCDS9618.1 TSSK4 gene_id:283629|Hs108|chr14        ( 328) 1238 137.4 1.6e-32


>>CCDS53890.1 TSSK4 gene_id:283629|Hs108|chr14            (338 aa)
 initn: 2246 init1: 2246 opt: 2246  Z-score: 1237.6  bits: 237.4 E(32554): 1.3e-62
Smith-Waterman score: 2246; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KE0 MGKGDVLEAAPTTTAYHSLMDEYGYEVGKAIGHGSYGSVYEAFYTKQKVMVAVKIISKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MGKGDVLEAAPTTTAYHSLMDEYGYEVGKAIGHGSYGSVYEAFYTKQKVMVAVKIISKKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ASDDYLNKFLPREIQVMKVLRHKYLINFYRAIESTSRVYIILELAQGGDVLEWIQRYGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ASDDYLNKFLPREIQVMKVLRHKYLINFYRAIESTSRVYIILELAQGGDVLEWIQRYGAC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SEPLAGKWFSQLTLGIAYLHSKSIVHRLMPSLSAAGRDLKLENLLLDKWENVKISDFGFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SEPLAGKWFSQLTLGIAYLHSKSIVHRLMPSLSAAGRDLKLENLLLDKWENVKISDFGFA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KMVPSNQPVGCSPSYRQVNCFSHLSQTYCGSFAYACPEILRGLPYNPFLSDTWSMGVILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KMVPSNQPVGCSPSYRQVNCFSHLSQTYCGSFAYACPEILRGLPYNPFLSDTWSMGVILY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 TLVVAHLPFDDTNLKKLLRETQKEVTFPANHTISQECKNLILQMLRQATKRATILDIIKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TLVVAHLPFDDTNLKKLLRETQKEVTFPANHTISQECKNLILQMLRQATKRATILDIIKD
              250       260       270       280       290       300

              310       320       330        
pF1KE0 SWVLKFQPEQPTHEIRLLEAMCQLHNTTKQHQSLQITT
       ::::::::::::::::::::::::::::::::::::::
CCDS53 SWVLKFQPEQPTHEIRLLEAMCQLHNTTKQHQSLQITT
              310       320       330        

>>CCDS76662.1 TSSK4 gene_id:283629|Hs108|chr14            (252 aa)
 initn: 1238 init1: 1238 opt: 1238  Z-score: 698.7  bits: 137.3 E(32554): 1.3e-32
Smith-Waterman score: 1666; 96.2% identity (96.2% similar) in 262 aa overlap (77-338:1-252)

         50        60        70        80        90       100      
pF1KE0 QKVMVAVKIISKKKASDDYLNKFLPREIQVMKVLRHKYLINFYRAIESTSRVYIILELAQ
                                     ::::::::::::::::::::::::::::::
CCDS76                               MKVLRHKYLINFYRAIESTSRVYIILELAQ
                                             10        20        30

        110       120       130       140       150       160      
pF1KE0 GGDVLEWIQRYGACSEPLAGKWFSQLTLGIAYLHSKSIVHRLMPSLSAAGRDLKLENLLL
       :::::::::::::::::::::::::::::::::::::::::          :::::::::
CCDS76 GGDVLEWIQRYGACSEPLAGKWFSQLTLGIAYLHSKSIVHR----------DLKLENLLL
               40        50        60        70                  80

        170       180       190       200       210       220      
pF1KE0 DKWENVKISDFGFAKMVPSNQPVGCSPSYRQVNCFSHLSQTYCGSFAYACPEILRGLPYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DKWENVKISDFGFAKMVPSNQPVGCSPSYRQVNCFSHLSQTYCGSFAYACPEILRGLPYN
               90       100       110       120       130       140

        230       240       250       260       270       280      
pF1KE0 PFLSDTWSMGVILYTLVVAHLPFDDTNLKKLLRETQKEVTFPANHTISQECKNLILQMLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PFLSDTWSMGVILYTLVVAHLPFDDTNLKKLLRETQKEVTFPANHTISQECKNLILQMLR
              150       160       170       180       190       200

        290       300       310       320       330        
pF1KE0 QATKRATILDIIKDSWVLKFQPEQPTHEIRLLEAMCQLHNTTKQHQSLQITT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QATKRATILDIIKDSWVLKFQPEQPTHEIRLLEAMCQLHNTTKQHQSLQITT
              210       220       230       240       250  

>>CCDS9618.1 TSSK4 gene_id:283629|Hs108|chr14             (328 aa)
 initn: 1238 init1: 1238 opt: 1238  Z-score: 697.3  bits: 137.4 E(32554): 1.6e-32
Smith-Waterman score: 2154; 97.0% identity (97.0% similar) in 338 aa overlap (1-338:1-328)

               10        20        30        40        50        60
pF1KE0 MGKGDVLEAAPTTTAYHSLMDEYGYEVGKAIGHGSYGSVYEAFYTKQKVMVAVKIISKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MGKGDVLEAAPTTTAYHSLMDEYGYEVGKAIGHGSYGSVYEAFYTKQKVMVAVKIISKKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ASDDYLNKFLPREIQVMKVLRHKYLINFYRAIESTSRVYIILELAQGGDVLEWIQRYGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ASDDYLNKFLPREIQVMKVLRHKYLINFYRAIESTSRVYIILELAQGGDVLEWIQRYGAC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SEPLAGKWFSQLTLGIAYLHSKSIVHRLMPSLSAAGRDLKLENLLLDKWENVKISDFGFA
       :::::::::::::::::::::::::::          :::::::::::::::::::::::
CCDS96 SEPLAGKWFSQLTLGIAYLHSKSIVHR----------DLKLENLLLDKWENVKISDFGFA
              130       140                 150       160       170

              190       200       210       220       230       240
pF1KE0 KMVPSNQPVGCSPSYRQVNCFSHLSQTYCGSFAYACPEILRGLPYNPFLSDTWSMGVILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KMVPSNQPVGCSPSYRQVNCFSHLSQTYCGSFAYACPEILRGLPYNPFLSDTWSMGVILY
              180       190       200       210       220       230

              250       260       270       280       290       300
pF1KE0 TLVVAHLPFDDTNLKKLLRETQKEVTFPANHTISQECKNLILQMLRQATKRATILDIIKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 TLVVAHLPFDDTNLKKLLRETQKEVTFPANHTISQECKNLILQMLRQATKRATILDIIKD
              240       250       260       270       280       290

              310       320       330        
pF1KE0 SWVLKFQPEQPTHEIRLLEAMCQLHNTTKQHQSLQITT
       ::::::::::::::::::::::::::::::::::::::
CCDS96 SWVLKFQPEQPTHEIRLLEAMCQLHNTTKQHQSLQITT
              300       310       320        




338 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:30:10 2016 done: Sat Nov  5 18:30:11 2016
 Total Scan time:  2.270 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]