Result of FASTA (omim) for
pF1KE0774
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0774, 445 aa
1>>>pF1KE0774 445 - 445 aa - 445 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3414+/-0.000384; mu= 17.2130+/- 0.024
mean_var=66.7297+/-12.815, 0's: 0 Z-trim(113.0): 56 B-trim: 0 in 0/53
Lambda= 0.157005
statistics sampled from 22122 (22175) to 22122 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.26), width: 16
Scan time: 9.380
The best scores are: opt bits E(85289)
NP_079224 (OMIM: 611649) ubiquitin carboxyl-termin ( 445) 3000 688.6 8.5e-198
XP_011517992 (OMIM: 611649) PREDICTED: protein FAM ( 425) 2661 611.8 1.1e-174
XP_011517993 (OMIM: 611649) PREDICTED: protein FAM ( 373) 2496 574.4 1.7e-163
XP_011517995 (OMIM: 611649) PREDICTED: protein FAM ( 298) 1965 454.1 2.3e-127
XP_016872161 (OMIM: 611649) PREDICTED: protein FAM ( 298) 1965 454.1 2.3e-127
XP_005252659 (OMIM: 611649) PREDICTED: protein FAM ( 272) 1837 425.1 1.1e-118
XP_011517996 (OMIM: 611649) PREDICTED: protein FAM ( 272) 1837 425.1 1.1e-118
XP_005252657 (OMIM: 611649) PREDICTED: protein FAM ( 272) 1837 425.1 1.1e-118
NP_001305259 (OMIM: 611649) ubiquitin carboxyl-ter ( 272) 1837 425.1 1.1e-118
XP_016872162 (OMIM: 611649) PREDICTED: protein FAM ( 272) 1837 425.1 1.1e-118
XP_016872160 (OMIM: 611649) PREDICTED: protein FAM ( 398) 1798 416.3 7.1e-116
XP_006717571 (OMIM: 611649) PREDICTED: protein FAM ( 418) 1798 416.3 7.4e-116
XP_016872165 (OMIM: 611649) PREDICTED: protein FAM ( 245) 1037 243.8 3.7e-64
XP_016872164 (OMIM: 611649) PREDICTED: protein FAM ( 245) 1037 243.8 3.7e-64
XP_016872163 (OMIM: 611649) PREDICTED: protein FAM ( 245) 1037 243.8 3.7e-64
>>NP_079224 (OMIM: 611649) ubiquitin carboxyl-terminal h (445 aa)
initn: 3000 init1: 3000 opt: 3000 Z-score: 3672.1 bits: 688.6 E(85289): 8.5e-198
Smith-Waterman score: 3000; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)
10 20 30 40 50 60
pF1KE0 MSELTKELMELVWGTKSSPGLSDTIFCRWTQGFVFSESEGSALEQFEGGPCAVIAPVQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MSELTKELMELVWGTKSSPGLSDTIFCRWTQGFVFSESEGSALEQFEGGPCAVIAPVQAF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LLKKLLFSSEKSSWRDCSEEEQKELLCHTLCDILESACCDHSGSYCLVSWLRGKTTEETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LLKKLLFSSEKSSWRDCSEEEQKELLCHTLCDILESACCDHSGSYCLVSWLRGKTTEETA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SISGSPAESSCQVEHSSALAVEELGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 SISGSPAESSCQVEHSSALAVEELGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDREC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 VLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDREC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 SGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 SGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 PEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 PEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 LGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTP
370 380 390 400 410 420
430 440
pF1KE0 IKRCLQTKWPYIELLWTTDRSPSLN
:::::::::::::::::::::::::
NP_079 IKRCLQTKWPYIELLWTTDRSPSLN
430 440
>>XP_011517992 (OMIM: 611649) PREDICTED: protein FAM188A (425 aa)
initn: 2661 init1: 2661 opt: 2661 Z-score: 3257.4 bits: 611.8 E(85289): 1.1e-174
Smith-Waterman score: 2661; 99.0% identity (99.8% similar) in 400 aa overlap (1-400:1-400)
10 20 30 40 50 60
pF1KE0 MSELTKELMELVWGTKSSPGLSDTIFCRWTQGFVFSESEGSALEQFEGGPCAVIAPVQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSELTKELMELVWGTKSSPGLSDTIFCRWTQGFVFSESEGSALEQFEGGPCAVIAPVQAF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LLKKLLFSSEKSSWRDCSEEEQKELLCHTLCDILESACCDHSGSYCLVSWLRGKTTEETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLKKLLFSSEKSSWRDCSEEEQKELLCHTLCDILESACCDHSGSYCLVSWLRGKTTEETA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SISGSPAESSCQVEHSSALAVEELGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SISGSPAESSCQVEHSSALAVEELGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDREC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDREC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 SGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 PEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 LGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTP
::::::::::::::::::::::::::::::::::::. ..
XP_011 LGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKMRHLRRGDQVTHPGSHSKSLAEQG
370 380 390 400 410 420
430 440
pF1KE0 IKRCLQTKWPYIELLWTTDRSPSLN
XP_011 LELSS
>>XP_011517993 (OMIM: 611649) PREDICTED: protein FAM188A (373 aa)
initn: 2496 init1: 2496 opt: 2496 Z-score: 3056.2 bits: 574.4 E(85289): 1.7e-163
Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KE0 MSELTKELMELVWGTKSSPGLSDTIFCRWTQGFVFSESEGSALEQFEGGPCAVIAPVQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSELTKELMELVWGTKSSPGLSDTIFCRWTQGFVFSESEGSALEQFEGGPCAVIAPVQAF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LLKKLLFSSEKSSWRDCSEEEQKELLCHTLCDILESACCDHSGSYCLVSWLRGKTTEETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLKKLLFSSEKSSWRDCSEEEQKELLCHTLCDILESACCDHSGSYCLVSWLRGKTTEETA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SISGSPAESSCQVEHSSALAVEELGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SISGSPAESSCQVEHSSALAVEELGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 VLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDREC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDREC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 SGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 PEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 LGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTP
::::::::::::
XP_011 LGPFLQEFFPDQI
370
>>XP_011517995 (OMIM: 611649) PREDICTED: protein FAM188A (298 aa)
initn: 1960 init1: 1960 opt: 1965 Z-score: 2407.7 bits: 454.1 E(85289): 2.3e-127
Smith-Waterman score: 1965; 98.3% identity (99.0% similar) in 299 aa overlap (147-445:2-298)
120 130 140 150 160 170
pF1KE0 EETASISGSPAESSCQVEHSSALAVEELGFERFHALIQKRSFRSLPELKDAVLDQYSMWG
.:: : .::::::::::::::::::::::
XP_011 MKRFPA--KKRSFRSLPELKDAVLDQYSMWG
10 20
180 190 200 210 220 230
pF1KE0 NKFGVLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKFGVLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDG
30 40 50 60 70 80
240 250 260 270 280 290
pF1KE0 DRECSGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DRECSGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDM
90 100 110 120 130 140
300 310 320 330 340 350
pF1KE0 ALVAPEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALVAPEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGL
150 160 170 180 190 200
360 370 380 390 400 410
pF1KE0 GIILLGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GIILLGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQT
210 220 230 240 250 260
420 430 440
pF1KE0 DDTPIKRCLQTKWPYIELLWTTDRSPSLN
:::::::::::::::::::::::::::::
XP_011 DDTPIKRCLQTKWPYIELLWTTDRSPSLN
270 280 290
>>XP_016872161 (OMIM: 611649) PREDICTED: protein FAM188A (298 aa)
initn: 1960 init1: 1960 opt: 1965 Z-score: 2407.7 bits: 454.1 E(85289): 2.3e-127
Smith-Waterman score: 1965; 98.3% identity (99.0% similar) in 299 aa overlap (147-445:2-298)
120 130 140 150 160 170
pF1KE0 EETASISGSPAESSCQVEHSSALAVEELGFERFHALIQKRSFRSLPELKDAVLDQYSMWG
.:: : .::::::::::::::::::::::
XP_016 MKRFPA--KKRSFRSLPELKDAVLDQYSMWG
10 20
180 190 200 210 220 230
pF1KE0 NKFGVLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKFGVLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDG
30 40 50 60 70 80
240 250 260 270 280 290
pF1KE0 DRECSGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DRECSGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDM
90 100 110 120 130 140
300 310 320 330 340 350
pF1KE0 ALVAPEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALVAPEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGL
150 160 170 180 190 200
360 370 380 390 400 410
pF1KE0 GIILLGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GIILLGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQT
210 220 230 240 250 260
420 430 440
pF1KE0 DDTPIKRCLQTKWPYIELLWTTDRSPSLN
:::::::::::::::::::::::::::::
XP_016 DDTPIKRCLQTKWPYIELLWTTDRSPSLN
270 280 290
>>XP_005252659 (OMIM: 611649) PREDICTED: protein FAM188A (272 aa)
initn: 1837 init1: 1837 opt: 1837 Z-score: 2251.6 bits: 425.1 E(85289): 1.1e-118
Smith-Waterman score: 1837; 100.0% identity (100.0% similar) in 272 aa overlap (174-445:1-272)
150 160 170 180 190 200
pF1KE0 LGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFGVLLFLYSVLLTKGIENIKNEIED
::::::::::::::::::::::::::::::
XP_005 MWGNKFGVLLFLYSVLLTKGIENIKNEIED
10 20 30
210 220 230 240 250 260
pF1KE0 ASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMKLLGIHEQAAVGFLTLMEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMKLLGIHEQAAVGFLTLMEAL
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE0 RYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFI
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE0 PDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVY
160 170 180 190 200 210
390 400 410 420 430 440
pF1KE0 HYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPS
220 230 240 250 260 270
pF1KE0 LN
::
XP_005 LN
>>XP_011517996 (OMIM: 611649) PREDICTED: protein FAM188A (272 aa)
initn: 1837 init1: 1837 opt: 1837 Z-score: 2251.6 bits: 425.1 E(85289): 1.1e-118
Smith-Waterman score: 1837; 100.0% identity (100.0% similar) in 272 aa overlap (174-445:1-272)
150 160 170 180 190 200
pF1KE0 LGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFGVLLFLYSVLLTKGIENIKNEIED
::::::::::::::::::::::::::::::
XP_011 MWGNKFGVLLFLYSVLLTKGIENIKNEIED
10 20 30
210 220 230 240 250 260
pF1KE0 ASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMKLLGIHEQAAVGFLTLMEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMKLLGIHEQAAVGFLTLMEAL
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE0 RYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFI
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE0 PDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVY
160 170 180 190 200 210
390 400 410 420 430 440
pF1KE0 HYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPS
220 230 240 250 260 270
pF1KE0 LN
::
XP_011 LN
>>XP_005252657 (OMIM: 611649) PREDICTED: protein FAM188A (272 aa)
initn: 1837 init1: 1837 opt: 1837 Z-score: 2251.6 bits: 425.1 E(85289): 1.1e-118
Smith-Waterman score: 1837; 100.0% identity (100.0% similar) in 272 aa overlap (174-445:1-272)
150 160 170 180 190 200
pF1KE0 LGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFGVLLFLYSVLLTKGIENIKNEIED
::::::::::::::::::::::::::::::
XP_005 MWGNKFGVLLFLYSVLLTKGIENIKNEIED
10 20 30
210 220 230 240 250 260
pF1KE0 ASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMKLLGIHEQAAVGFLTLMEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMKLLGIHEQAAVGFLTLMEAL
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE0 RYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFI
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE0 PDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVY
160 170 180 190 200 210
390 400 410 420 430 440
pF1KE0 HYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPS
220 230 240 250 260 270
pF1KE0 LN
::
XP_005 LN
>>NP_001305259 (OMIM: 611649) ubiquitin carboxyl-termina (272 aa)
initn: 1837 init1: 1837 opt: 1837 Z-score: 2251.6 bits: 425.1 E(85289): 1.1e-118
Smith-Waterman score: 1837; 100.0% identity (100.0% similar) in 272 aa overlap (174-445:1-272)
150 160 170 180 190 200
pF1KE0 LGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFGVLLFLYSVLLTKGIENIKNEIED
::::::::::::::::::::::::::::::
NP_001 MWGNKFGVLLFLYSVLLTKGIENIKNEIED
10 20 30
210 220 230 240 250 260
pF1KE0 ASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMKLLGIHEQAAVGFLTLMEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMKLLGIHEQAAVGFLTLMEAL
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE0 RYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFI
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE0 PDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVY
160 170 180 190 200 210
390 400 410 420 430 440
pF1KE0 HYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPS
220 230 240 250 260 270
pF1KE0 LN
::
NP_001 LN
>>XP_016872162 (OMIM: 611649) PREDICTED: protein FAM188A (272 aa)
initn: 1837 init1: 1837 opt: 1837 Z-score: 2251.6 bits: 425.1 E(85289): 1.1e-118
Smith-Waterman score: 1837; 100.0% identity (100.0% similar) in 272 aa overlap (174-445:1-272)
150 160 170 180 190 200
pF1KE0 LGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFGVLLFLYSVLLTKGIENIKNEIED
::::::::::::::::::::::::::::::
XP_016 MWGNKFGVLLFLYSVLLTKGIENIKNEIED
10 20 30
210 220 230 240 250 260
pF1KE0 ASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMKLLGIHEQAAVGFLTLMEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMKLLGIHEQAAVGFLTLMEAL
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE0 RYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFI
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE0 PDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVY
160 170 180 190 200 210
390 400 410 420 430 440
pF1KE0 HYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HYNGLKQSNYNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPS
220 230 240 250 260 270
pF1KE0 LN
::
XP_016 LN
445 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:22:57 2016 done: Sat Nov 5 04:22:59 2016
Total Scan time: 9.380 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]